Pectobacterium punjabense: E2566_03495
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Entry
E2566_03495 CDS
T06530
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppuj
Pectobacterium punjabense
Pathway
ppuj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2566_03495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuj03019
]
E2566_03495
03009 Ribosome biogenesis [BR:
ppuj03009
]
E2566_03495
Enzymes [BR:
ppuj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E2566_03495
Messenger RNA biogenesis [BR:
ppuj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E2566_03495
Ribosome biogenesis [BR:
ppuj03009
]
Prokaryotic type
rRNA helicases
E2566_03495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJA19062
LinkDB
All DBs
Position
761946..763844
Genome browser
AA seq
632 aa
AA seq
DB search
MTDLFTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAA
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDIET
LAAALLKMAQGERPLILPPDPVFRPRREFRDRDESRGDSRGDRRRDPRDSRESRDGDRPQ
RRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGGRPGGERRDGAAPRRSFGGGERRE
GNGNGGERRERSFNRENRDGASRAPRRRPADA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatttacttctttttccgatttggggctgtctgctcctattattaatgcc
ctgaccgatctgggctatgaaaaaccatcgccgattcaggctgaatgtattcctcacctg
ctgaacggtcgtgatgtgctgggtatggcacagaccggtagcggtaaaactgcggctttt
gctctgccattactcaataacttaaaacctgagttaaaagcgccgcagatgctggtgctg
gcaccaacccgtgagttggctgttcaggttgctgaagcctgtaatgattttgctaagcat
atgcacggcgttaatgttgttgccctgtacggcggccagcgttatgacgttcaactgcgc
gctttgcgtggtggagcccagatcgttgttggtactcctggtcgtctgctggatcacttg
aaacgcggtacgctggatctgtccaacctgagtggtctggttctggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgcggcg
caccagactgcgctgttctctgcaaccatgccagaagcgattcgccgcattacgcgtcgt
ttcatgaaagatccgcaagaagttcgcatccaatcaagcgtgactacgcgtccagatatc
agccagagctactggactgtgcagggtatgcgtaaaaatgaagcgctggtgcgtttcctg
gaagcagaagattttgatgcggcaattattttcgttcgtaccaagaacgctacgctggaa
gtggctgaagcgttggaacgtagcggttacaacagtgctgcgctgaatggtgacatgaat
caggcactgcgtgagcaaacgctggagcgtctgaaagatggccgtttagatatcctgatc
gcgaccgatgttgcggcgcgtggtttggacgttgagcgtatcagtctggtagtgaactac
gatattccgatggatgccgaatcttacgtccaccgtattggtcgtactggtcgtgcaggt
cgtgcaggtcgtgctctgctgtttgtagaaaaccgcgagcgtcgcctgctgcgcaacgtc
gaacgcacaatgaagctgactattcctgaagtggaattgccaaatgcggaactgttggga
caacgtcgtctggctaagtttgctgctaaagtacagcaacagctggaaagcagcgatctg
gacatgtaccgcgcgctgttaacgaaactgcaaccgcaggaagagctggatatcgaaacg
ctggccgccgcgctgctgaaaatggcacagggcgaacgtcctctgattctgccgccagat
ccggtattccgtccgcgtcgtgaattccgcgatcgtgatgagtctcgtggtgattcacgt
ggcgatcgtcgccgcgatccgcgtgattctcgcgaaagccgtgacggtgaccgtccacaa
cgccgtgagcgtcgtgatgcgggtgagatggaactgtatcgtatcgaagtgggtcgtgat
gacggcgtcgaagttcgtcatattgttggtgctatcgccaacgaaggggatatcagcagc
cgttacattggtaacatcaagctgttcgggtcccactcaacgatcgagctgccaaaaggt
atgccgggcgacctgttatcgcactttactcgcacgcgtattctgaacaaaccaatgaat
atgcaattgctgggtgatgccgttgcacagccagaacgtcgtggtggtggtcgtcctggt
ggcgaacgtcgtgatggtgccgctccacgtcgctctttcggcggtggtgaacgtcgtgaa
ggtaacggtaacggcggtgagcgtcgtgagcgttctttcaaccgtgaaaaccgtgacggt
gcttcacgtgctccgcgtcgtcgtcctgctgacgcgtaa
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