Pectobacterium punjabense: E2566_03940
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Entry
E2566_03940 CDS
T06530
Name
(GenBank) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ppuj
Pectobacterium punjabense
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
E2566_03940
Enzymes [BR:
ppuj01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
E2566_03940
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Paralog
Gene cluster
GFIT
Motif
Pfam:
CBM-like
fn3_3
Rhamnogal_lyase
CarboxypepD_reg
CarbopepD_reg_2
EMC7_beta-sandw
SdrD_B
Motif
Other DBs
NCBI-ProteinID:
QJA22407
LinkDB
All DBs
Position
867338..869020
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AA seq
560 aa
AA seq
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MLAPYGYSAQDNAVSLSVSGLNTVLDNGLLKVTFGEDGSAVSMVTGGKNIVINLSGAARD
PSKTRSAYLDYYVKGVKDFVPERVEVLRNDREMAHVAYIDDRGGLLKLEYHLIMRRGVSG
LYSYVVAENSGSQNVNVSELRNVYRFDPARLDHLYSGVRQGKPLLYSQLEASPKVQDETW
RLPDGSIYSKYDFAGYMRAAPFWGVFGNGVGAWLIHGNREYFSGDALKQDLLVHQDAIIL
NYMTGSHFGTPDMKAPPGWKKFYGPWLLYINQGDTRQMLADAQRQALTETVSWPYQWVND
SRYALERTQVSGRVASQQPVTVVLSSSLDEPFDVQTRGYSYQATTDSQGHFAIPHVRPGN
YHLTVYANSGTQPGVLAEQTLSVSGDKQALPVITLPNAEPVVWAIGQANRLASEFRFGNE
ARNTRWQHEVPANLTFDIGRSDYQRDWYYAQTKPGKWDIRFALRPEKKTYFLNIALAAAS
NSGMSEPSTPQLAVMVNGTTLETLTYDNDKAIYRGALQSGRYHIARIPVSSRFLKNGNNT
ITLQLKGGSVMYDVVTLSEE
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaccctatggctatagtgcacaggataatgccgtgtcgttatccgtttcgggc
ttgaataccgtgttggataatggcttgctgaaagtcacattcggtgaggatggcagcgcg
gtgagcatggtgacggggggtaaaaatatcgttatcaacctgtccggtgcggcgcgtgac
ccgagcaaaacccgtagtgcttacctcgactattacgttaaaggcgtcaaagattttgtc
cccgagcgcgtagaggtgctgcgcaacgatcgtgagatggcgcatgtggcctatattgac
gatcgcggcgggctgctaaaacttgaatatcacctgattatgcggcgcggcgttagcggg
ctttatagctatgtggtggccgaaaatagcggaagtcagaatgttaacgtcagtgaactg
cgtaacgtttatcgcttcgatcctgcgcggttagaccacctctacagcggcgttcgtcag
ggcaaaccgctactttatagccagcttgaggcctcaccaaaggtgcaggatgaaacctgg
cgactgccggatggcagtatctattccaaatatgatttcgctggctacatgcgtgcagcg
cctttctggggcgttttcggtaacggcgtaggcgcatggctgattcacggcaatcgggag
tatttctccggcgatgcgcttaagcaggatttgctggtgcatcaggatgcgatcattctg
aactatatgacgggttcgcactttggtacgccggatatgaaagctccgccgggctggaaa
aaattctacggaccgtggctgctctacattaaccaaggcgataccaggcagatgctagcg
gatgcacagcgtcaggcgctgacagaaacggttagttggccgtaccaatgggtgaacgat
tctcgctatgcgctcgaacgcacgcaggttagcggacgcgttgctagccagcagcccgtc
accgtcgtgctttcatcatcattggatgaaccgtttgatgtgcagacccgcggttattcg
tatcaggcaacgacagactcacagggacattttgctattcctcatgtccgtccgggcaat
taccatctaaccgtgtacgccaatagcggtactcagccaggggtattggcagagcaaacg
ctgtccgtttccggtgataagcaagcgttgccggtgataacgctgccgaacgctgaaccg
gtggtttgggcgattggacaggcaaatcggctggcgagcgaatttcgctttggtaacgag
gcgcgcaatacccgctggcagcatgaggttccggcaaatctgacgttcgatattggccgc
agcgactatcagcgcgactggtattacgcacagaccaaaccgggaaaatgggatatccgt
tttgctctgcggccggagaagaaaacctatttcctgaacatcgcactggcggcagccagc
aacagcggcatgagcgaaccgtccacgccgcaactggcggtaatggtaaacggcacaacg
ctggagacgctgacttacgacaatgacaaagccatctatcgcggtgcgctacagagtggt
cgctatcacattgcccgtatcccagtgtcatcccgtttcctgaaaaatggcaacaacacc
atcacactgcaattaaaaggcggcagcgtgatgtatgacgtagtgacgttaagcgaggaa
taa
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