Pectobacterium punjabense: E2566_05240
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Entry
E2566_05240 CDS
T06530
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppuj
Pectobacterium punjabense
Pathway
ppuj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
E2566_05240 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuj03400
]
E2566_05240 (recD)
Enzymes [BR:
ppuj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
E2566_05240 (recD)
DNA repair and recombination proteins [BR:
ppuj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
E2566_05240 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RecD_N
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
NAT10_TcmA_helicase
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
Herpes_Helicase
PhoH
DEAD
UvrD_C
AAA_28
AAA_17
T2SSE
CbiA
AAA_33
MukB
DUF87
Zeta_toxin
FtsK_SpoIIIE
SRP54
TrwB_AAD_bind
AAA
ADK
NTPase_1
ATPase
Motif
Other DBs
NCBI-ProteinID:
QJA19367
UniProt:
A0ABX6KZX0
LinkDB
All DBs
Position
1143404..1145269
Genome browser
AA seq
621 aa
AA seq
DB search
MIALLEMAQARRLLRPLDIQFARMLADEAQPDLLLAAACLSAHSGAGHVCLPLENLQAQT
LFDGRDPDLAQQLLAGIGLNTVAAWQQRLLASNAVSDGSKPTPLVLQGEKLYLQRSWQSE
GHVAQFVASERDAVPVDEPAVRSVLDRLFPDSGEEIDWQKVAAAVALTRRIAIISGGPGT
GKTTTVAKLLAALIELNTGDALRIQLAAPTGKAAARLTESLGLALHRLAVDQQQREAFPQ
EATTLHRLLGAVTDSQRLRHHQGNPLHLDVLIVDEASMVDLPMMANVIAALPVPARIIFL
GDRDQLASVEAGAVLGDICRFAEAGYSRARAQQLQRLTGCILDDSGPEGQTTVGDSICLL
RRSYRFDLNSGIGQLALAVNGGDDARVRAVLNGEFADVACSALAEGEEYQTMLAQCVEGY
RDYLQLIASGATPDVVLLAFQRYRQLCALREGPFGVAGLNQRIEQALHQSGLIQRSRNPL
NRWYPGRPVMIERNDAALGLFNGDIGIAMMGENGELRVFFPLPNGETKDVTPSRLPPHET
AYAMTVHKSQGSEFDHTALVLPNHYLPVLTRELVYTAITRARQRLSLYTDVRILCRAVKT
PTQRYSGLKERISALMNGDTP
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgattgccttacttgaaatggcgcaggcgcggcggttactgcgcccgctggatatacag
tttgccagaatgttggcggatgaggcgcagcccgacctgctgctggctgccgcctgcctg
agtgcgcattcgggggcgggacacgtgtgtttaccgctggaaaatttgcaggcacagacg
ctgtttgatggtcgcgatcctgacttagcgcagcagttgctcgcaggaattgggctaaac
acggttgctgcttggcaacagcgtttgctggcgtccaatgccgttagcgacggtagcaaa
cccacgccgctggtgctgcaaggcgaaaagctttatttacagcgtagttggcagagtgag
gggcatgtagcgcagtttgttgccagcgagcgtgatgcggtacccgtcgatgaacctgcg
gtccgctctgttctggatcggctgtttcctgactcgggcgaagagattgactggcagaag
gtagccgctgctgttgccttgacgcgccgtattgcgattatttctggtggtccgggaacg
gggaaaaccacgacggttgccaagctattggcggcgctgattgagctgaatacgggagat
gcgttacgtattcagttggctgcgcctaccggaaaagcggctgcacggctaacggagtct
ctggggctggcattgcaccgtctggcggtagatcagcagcagcgagaggcgtttccgcaa
gaggcgacaacactgcatcggcttttaggcgcggtgacggatagccagcgcctgcgtcac
catcagggaaatccgctgcatctggatgtactgattgtggatgaggcgtcaatggttgat
ctgccgatgatggcgaatgtgatcgccgcgcttccggtgccggccagaattatctttctg
ggtgaccgcgatcaactcgcgtccgtcgaagcgggggcggtgttaggtgacatctgccgt
ttcgccgaggctggctatagtcgtgcgcgtgcgcagcagttgcaacgcctgacaggctgt
atattggatgacagtggtcccgaagggcagacgacggtcggtgacagcatctgcctgtta
cgccggagctaccgcttcgatctgaattctggtattgggcaactggcgctagcggtgaac
ggtggtgatgatgctcgcgtacgtgcggtgctgaacggtgagtttgccgatgtagcctgt
agcgcattagccgagggcgaagagtatcagacgatgttggcacagtgcgtcgaaggatat
cgtgattatctacagcttatcgcttcaggagcgacaccggatgtcgtgttgcttgccttc
cagcgctatcgccagctgtgcgcgttgcgcgaagggccatttggtgtagcaggtctgaat
caacgtatcgagcaggctttgcatcagtctgggctgattcagcgcagtcgtaatccgctt
aatcgctggtatcctggccgaccggtaatgattgaacgtaatgatgccgcattgggtttg
ttcaatggtgatatcggtatcgctatgatgggggaaaatggggaactgcgcgtatttttc
cccttgccgaatggcgaaaccaaggatgttacgccaagtcgcctgccgccacatgaaacg
gcctatgcgatgacggtgcataaatcgcagggatctgagttcgatcatactgcgctggtg
ctgcctaaccattacttacccgtgctgacgcgggagctggtgtataccgccatcacgcgt
gcgcgccagcgtttgtcactctataccgatgttcgtattctctgtcgggcggtgaaaacg
ccaacgcagcgctatagcggcttgaaagagagaattagcgcactgatgaatggcgacaca
ccttaa
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