Pectobacterium punjabense: E2566_05505
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Entry
E2566_05505 CDS
T06530
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppuj
Pectobacterium punjabense
Pathway
ppuj03030
DNA replication
ppuj03430
Mismatch repair
ppuj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E2566_05505 (dnaE)
03430 Mismatch repair
E2566_05505 (dnaE)
03440 Homologous recombination
E2566_05505 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppuj03032
]
E2566_05505 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppuj03400
]
E2566_05505 (dnaE)
Enzymes [BR:
ppuj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E2566_05505 (dnaE)
DNA replication proteins [BR:
ppuj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E2566_05505 (dnaE)
DNA repair and recombination proteins [BR:
ppuj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E2566_05505 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QJA19414
UniProt:
A0ABX6KZC4
LinkDB
All DBs
Position
1199776..1203258
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGA
GVKPIIGADFYVESDELGDELAHLTVLAMNNEGYQNLTLLISHAYQRGYGAAGPTIDRDW
LIEHQEGLILLSGGRRGDVGRFLLRGNQAQAEQSLAFYQEHFPQRYYLELTRTSRPDEES
YLHAAVELATKHGLPVVATNEVCFISTDDFEAHEIRVAIHDGYTLDDPKRPRHYSPQQYM
RSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLVECSKKGL
EDRLEFLFPDPEVRAARRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDKVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDSEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
ALADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDGERETLGLY
LTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLAARVMVTKRGNRIGVCTLD
DRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARARLRFGAAWRVTPAD
ALLNELRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccacgttttgttcacctgcgtgttcacagtgactattccatgatcgatggg
ctggccaaagtcggtccgctggtaaaaaaagcggcggcgctcgggatgcccgcgctggcg
attaccgattttaccaacctgtgtgggctggttaaattctatggcggcgcgcatggcgca
ggggtcaaacctatcatcggcgcagacttctatgtcgaaagcgatgaattaggggatgaa
ttggcgcatctcactgtgttagccatgaacaatgaaggctaccagaatctcacgctgctg
atttcccatgcttatcaacgaggctatggcgctgccgggccgacaattgaccgtgattgg
ctgattgagcatcaggaaggtctgattcttctatcgggtggtcgccgaggtgatgtgggg
cggtttttactgcgtggcaatcaggcgcaggccgagcagagtctggcgttctatcaggaa
cacttccctcagcgttactatctggagctcacccgtacgtcccgcccggatgaagaaagc
tatttgcatgcggcggtggagctagcaaccaagcacggtttgcccgttgtagcgaccaac
gaagtgtgctttatcagcacggatgattttgaggctcacgaaattcgcgtggccattcac
gatggctatacgcttgacgatcctaaacgcccacgtcattacagcccgcagcaatatatg
cgttccgaagaggaaatgtgtgagctgtttgcagatatccctgaagcgctggcgaacagc
gttgaaattgccaaacgctgtaacgtaacgattcgtctgggcgaatattttctgccgcag
ttcccgacgggcgacatgaccacggaagattttctggttgagtgctcgaaaaaagggctg
gaagatcgcctcgaattcctgttccccgacccggaagtgcgtgctgcgcgtcggccggaa
tatgatgagcgtctggatattgaactgggcgttatcaaccagatgggattccccggctac
ttcctgatcgtcatggagtttatccagtggtcgaaggataacgatgtgcctgttggccca
ggacgtggttccggtgcgggctcattggtcgcctacgcgctgaaaatcaccgatctggac
ccgctggaattcgatctgctgtttgaacgcttcctcaaccctgaacgtgtctccatgcct
gactttgacgtcgatttctgtatggaaaaacgcgacaaggtcatcgaccatgttgcggaa
atgtacgggcgtgatgcggtctcgcagattatcacctttggtacgatggcggcgaaagcg
gtgattcgtgacgtagggcgtgtgcttggacacccttatggatttgtcgatcgcatttca
aaactggtgccgcccgatccgggcatgacgctggaaaaggcgtttgctgccgaaccgcag
ctgccggaaatttatgaagccgatgaggaagttaaagccctcatcgatatggcgcgcaag
ctcgaaggagtcacgcgtaacgccggtaaacacgcaggtggggtggtaatatcccccacc
aaaataaccgattttgcgccgctgtattgtgattcggaagggaatcatccggttacccag
tttgataaaaatgacgtggaatatgctgggctggtgaagttcgacttccttggcttgcgt
acgttgaccatcatcgactgggcgctggagatgatcaacgctcgtcgtgcgaagcaaggt
caggaaccgattgatatcgccgcgatcccactcgacgataagaaaagtttcgacatgctg
caacgctcggaaaccacggcggtattccagcttgaatcgcgtggcatgaaagatctgatt
aagcgcctaaagcccgactgttttgaagatatgatcgcattggtggcgctgttccgcccc
ggcccgctgcaatctggcatggtggataacttcattgaccgtaagcatgggcgtgaagcg
atctcgtatcctgatattgaatggcagcacgagtctctcaagcctgtactggaaccgacc
tacggcattatcctgtatcaggaacaggttatgcagattgcgcaggttctggcgggctat
acgctgggcggcgcggatatgttgcgtcgtgcgatggggaaaaagaacccggtcgagatg
gcgaagcagcgtggtggctttgaagatggtgctaaatcgcgcggcgtgaacggtgagctg
gcggttaagatttttgacctggtggaaaaattcgccggttacggctttaataaatcacac
tccgctgcttatgcgctggtgtcgtaccaaacgctgtggctgaaagcgcactatcctgcg
gagttcatggcggcggtgatgacggccgatatggacaacacggacaaagtggtggggctg
gttgatgaatgctggcggatggggttaaaaatcctgcctccagatatcaatagcggtctg
tatcacttccacgttaacgacgatggcgagattgtttacggtatcggcgcaattaaaggt
gtaggtgaaggtccgattgaggccattattgaagcgcgtaatcagggtggctattttagg
gaactgtttgatctttgtgcccgcactgacattaaaaagctgaaccgccgcgtgctggaa
aagctgattatgtccggagcgttcgaccgtttggggccgcatcgcgccgcgctgatgaac
gcattggctgatgcgctaaaggctgccgatcagcacgcgaaagcggaagccattggtcag
gtggatatgttcggcgtgctggctgatgcacctgagcaagttgagcaatcctacagcact
gtgccaccgtggccggagcaggtggtgctggatggtgagcgggagacgctggggctgtac
ctgaccggccacccgatcacccaatatattaaggaaattgaacgctatgccggtggcgta
cgtttgaaagatatgcacccgacggatcggggtaaaatgaccactgccgttgggctggtg
ttggcggctcgcgtcatggtcaccaaacggggtaaccgtattggtgtctgtaccttggac
gatcgttccggtcggcttgagattatgctgtttaccgatgcattggaaaaatatcagcat
ttacttgagaaagaccgtatccttatcgccagtggacaggtcagctttgatgacttcagc
ggcgggcttaaaatgaccgtccgagagttaatggatatcagtgaagcgcgggaaaaatac
gcgcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagctattaaaccgt
ctccgccaatcgttggaaccccatcgatcggggacgatcccagtgcatctctattaccag
cgtgaagatgcgcgcgcccgactacgtttcggcgcagcatggcgtgtaacgcctgccgat
gcgctactgaacgagctgcgcacattagtgggtaatgagcaggtggaactggaatttgac
taa
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