Pectobacterium punjabense: E2566_05715
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Entry
E2566_05715 CDS
T06530
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ppuj
Pectobacterium punjabense
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuj03400
]
E2566_05715
DNA repair and recombination proteins [BR:
ppuj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
E2566_05715
Archaeal homologous recombinant proteins
E2566_05715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
AAA_21
cobW
nSTAND3
SMC_N
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJA19451
LinkDB
All DBs
Position
complement(1264387..1268070)
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNALKGEWKIDFTQEPFSSNGLFAITGPTGAGKTTLLDAICLALYHETPR
LGQLSATNNDLMTRNTAECLAEVEFEVKGVGYRAFWSQRRARNDPNRNLQSPKAELALID
GGKILCEKLNDKKDMITQITGLDFGRFTRSMMLSQGQFAAFLNAKASDRAELLEELTGTD
IYGLISERVYEKYNQANIALSTLQARASGIQLLTDEQRQQVETQLAELLQQEQQGNAERE
QVLTMLRWFEQLTQRQTQLTSTQLQHASAESAIQRAKPQLDKLANSEPAEKLRPLHQEKE
RYRQESLTLAQQIEQLTEKQGAEQLALATLRQQEEKAEQNANEHKRERQKQELLINEQVV
PLDHRIATLEQQKTQQQDELAKTQRRLQADESKQTQIAAEQQQAKQQIEQIQSYRQQHAH
HQQWGEQLPLWRTQFRQLRQLNDEQQKLSQKQIQHTEQSTALQQEAATLTAQQREQQTVV
DAARELFTLHDETRKNQETQQPLSALHQRFNQLSAQRTVRQQLATISDQYQRLHARQQQH
LAKQDEIQGHISQSEILKKQQQSEHEQRTQHLDDLETVYRQEERIVKLEAERQRLQAGDP
CPLCGSTEHPAIERYQALQPSETQNRLTALRQEVSQLTTALANTTARLTSLEQQREQLQQ
DIAQNDGEHQTLLQQWQDVSERLQVNYTLEEQDKIAAWFAQREVEEQDIRQQISVREQEQ
KRWQESKDSLTASETLLRELDQKIALNAQQQTSLRVTQEETAQSLQNVQQQLTQFAQEIT
QTLANAGLLLPEDGAQDSWLVQRESEWQDWKTKEQEQSRLIPLLATLESDFQHLNRSVTE
AKQQFQTQQQHLEQHLALLSANQQERLALFGDRQIATVREQLQRTSQQYDDALRLALSAR
QQTETTLSRLTGELTRTQQQYEQSMHQRDSATERFTQALQQSAFADEAAFLNALLDEQER
QTLQALKEKLYQSLQQAAVLHQQAEQALLEQQQKRPDPLPEEATQTSIQQQLSEQDETLK
ANLRQQGECQRQLSDDRQQRQNQHALLNEIAQSQKMCDDWDTLNSLIGSQNGHKFRKFAQ
GLTLDHLIYLANIQLSRLHDRYQLKRKPGGELELLVMDTWQADAERDTKTLSGGESFLVS
LSLALALSDLVSHRASIDSLFLDEGFGTLDAETLDIALDALDNLNASGKIIGVISHVEAM
KERIPVQIKVQKVNGLGVSRLAPQYAV
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcagtctgcgtttaaagaatctcaacgcgctgaaaggcgaatggaagatc
gacttcactcaagagccgttttccagcaacggcttgtttgccattaccggcccaacaggg
gcaggaaaaaccacgctgctggatgccatttgtctggcgctgtatcacgaaacaccacgg
ttgggtcagctttccgctactaataacgatctgatgactcgtaacaccgccgagtgcctc
gccgaggtcgagtttgaggttaaaggcgtgggatatcgtgccttctggagccagcgtcgg
gcaagaaatgatccaaatcgtaacttgcagtctcccaaggccgaacttgccctcattgac
ggtggcaaaattctgtgtgaaaagctcaatgataagaaagacatgatcacacagatcacc
ggactggattttggccgctttacgcgatccatgatgctgtcacaggggcaatttgccgcc
tttctcaacgcaaaagccagcgacagagcggaactgctggaggaactgactggcacagac
atttatggactgatttccgaacgtgtctatgaaaaatacaatcaggcaaacatcgcgctg
agcacgctacaggcgcgcgcgtcaggtattcagctgttaaccgatgagcagcgtcagcag
gtagaaacacagcttgctgagctgctccagcaggagcaacagggcaacgccgagcgtgag
caagtactgactatgctgcgctggtttgagcaattgacgcagcggcagacgcagctaacc
agcacgcagttacaacacgcaagcgccgaatcagccattcagcgggccaagccgcagctc
gataagttagccaacagcgagccggcagaaaagctaaggccactacaccaggaaaaggag
cgctatcgacaggagtcccttacactcgcccagcagattgaacaactgactgagaaacag
ggcgcagaacagttggctttggcgacgctacgccagcaggaagaaaaggcggagcagaac
gcgaatgagcataaacgggaacgtcagaaacaagagttgttgatcaacgaacaggttgtg
ccgcttgaccatcgtatcgctacactggaacagcaaaaaacccagcagcaggacgaactg
gcaaaaacacagcgtcgcctgcaagccgacgaaagcaaacaaacgcagatagcagcggaa
cagcagcaggcaaaacagcagattgaacagattcaatcttatcgccagcaacacgcacat
catcagcagtggggagaacaacttcctctgtggcgcacccagtttcggcagttgcgccag
cttaatgacgagcaacagaagctaagccaaaaacagatacagcacaccgaacaatcaaca
gcgctccagcaagaagcggcaacactgacggcacaacagcgcgaacaacaaacggtcgtt
gatgccgcgcgcgagttgttcacactacacgatgagacccggaaaaatcaggaaacccag
cagccgctttccgcgctgcaccagcggtttaatcaactcagcgcccagagaaccgtacgc
caacagctcgcgacaatcagcgaccaataccaacgtcttcacgcccgtcagcagcagcac
ctcgccaaacaagatgagatacaagggcatatcagtcagtcagaaatcttaaagaaacag
caacagtctgaacacgagcagcgcactcagcatctcgacgatctggaaacggtgtaccgt
caggaagaacgcatcgttaaattggaagccgaaagacagcgactacaggctggcgatccc
tgtccgttgtgcggttcaactgaacacccggcgattgaacgctatcaggcattacaacca
tctgaaactcaaaatcgcctgacggcgttacgccaggaggtcagtcagttaacaacggcg
ctggcgaatacgacagcacggttgacctcactagagcagcagcgggaacagctgcaacag
gatatcgctcagaacgatggcgagcatcaaacgctgttgcaacagtggcaagatgtcagt
gagcgcttacaagttaactatacgctggaagagcaggacaagattgctgcctggtttgca
caacgcgaggtcgaagaacaggatattcgccagcagattagcgtgcgcgaacaggagcaa
aagcggtggcaggaaagtaaggattcactgaccgcctcagagacattattgcgagaactc
gaccaaaaaattgcactaaacgcccagcaacagacctcgctacgcgtcacgcaggaagaa
accgcccagtcgctgcaaaacgtgcagcagcagctcacgcagttcgctcaggaaatcacg
cagacgctggcaaatgcaggtctccttttgccggaagatggcgctcaggatagctggctg
gttcagcgcgagagcgaatggcaagattggaaaaccaaagaacaggagcagtctcgctta
atccccctgttagccacactggaaagcgattttcagcatctgaatcgcagcgtgaccgag
gcaaaacagcagttccaaacgcagcaacagcacctggaacagcacctcgcgttactcagc
gcgaaccaacaagagcggctggcgttatttggggacaggcagatcgctaccgtgcgcgaa
cagctacagcgaaccagccagcagtacgacgatgcactcagactagccctatcagctcgt
cagcaaaccgaaacgacgttgagccgcctgacgggagaactgacccgcacgcagcagcag
tatgagcagagcatgcatcaacgcgatagtgcgactgaacgattcactcaggctttgcag
caaagtgcttttgctgatgaagccgccttcctgaatgcgctgcttgatgaacaggaacga
cagactttgcaggcattgaaggagaagctgtatcagagcttgcagcaggcagcagtgctt
caccagcaggctgaacaggcattacttgagcaacaacaaaaacggcctgaccccctacca
gaagaagcaacgcagacatcgatacaacagcagctctcagaacaagatgaaacactgaaa
gccaacctccggcagcagggtgaatgccaacgtcagctatctgacgatcggcaacagcgc
cagaatcaacacgctctgcttaacgagatcgcccaaagccagaaaatgtgtgacgattgg
gatacgctaaactcgctaatcggctcacaaaacgggcataaattccgcaagtttgctcag
gggctaacgttggatcatctgatctacctcgccaatatccagctttcacgcctgcacgat
cgttatcagctaaaacggaaacccggtggcgagctggaacttctggtgatggatacctgg
caggcagatgccgagcgcgatacaaaaacgctatccggtggcgagagttttttggtgagt
ctatcactggcgttggcgctatccgatctggtcagccacagagccagcatcgactcgctg
tttctggacgaaggcttcggtacgctggatgccgaaacgctagatatcgcactggatgcg
ctcgataacctcaacgcctccggtaaaatcatcggcgtcatcagtcatgtcgaagccatg
aaagaacgcattccagtacagatcaaagtgcagaaggttaacggactaggcgtcagccga
ttggcaccacagtacgccgtttag
DBGET
integrated database retrieval system
