Pectobacterium punjabense: E2566_09455
Help
Entry
E2566_09455 CDS
T06530
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ppuj
Pectobacterium punjabense
Pathway
ppuj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
E2566_09455 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuj03400
]
E2566_09455 (sbcB)
Enzymes [BR:
ppuj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
E2566_09455 (sbcB)
DNA repair and recombination proteins [BR:
ppuj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
E2566_09455 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
E2566_09455 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
E2566_09455 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QJA20128
LinkDB
All DBs
Position
complement(2080898..2082325)
Genome browser
AA seq
475 aa
AA seq
DB search
MADKTQPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPADDYLPEPE
AVMITGITPQAALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYD
PYAYSWQNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHD
AMSDVYATIAMAKLFKQAQPKLFEYLFLLRNKNKISALIDIPQMKPLVHVSGMFGAARSN
TSWVVPLAWHPDNRNAVIMCDLAGDMTPLLELDSETLRERLYTRRDALEADQSAVPLKLV
HINKCPVLAPANTLRPEDAERLGIDRQRCLDNLALLRNDASVREKVVELFAEAPAFVASD
DVDLRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDD
REQQRWLQHRRAVFTPERLQSYLSELSDLYQLHEDDKEKMAQLKALYAYAQELVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaacacaacccacttttttcatccacgactacgagacatttggcaaacat
cccgcgcgcgatcgcccggcgcagtttgcaggtgtccgaaccgatatggatttcaatatt
atcggcgagccgttggttatttattgccgtccggccgatgattacctgccggaaccggaa
gcggtaatgattacgggcattaccccgcaggccgcgctggccaaaggcgtgaatgaagcg
gagttcgcccgtcaaatccacgacgcgttcagcgtacccggcacctgtattatgggctat
aacaacattcgctttgatgatgaagtcagccgcaatattttctatcgtaacttctacgat
ccttacgcttacagctggcaaaacggcaattctcgctgggatttactggatgcgttacgc
gcctgctatgccttgcggccagaaggcatcgtctggccagaaaatgatgacggtctaccc
agtttccgtcttgagcacctgacgaaagcaaacggcattgcgcacgagcaggcgcatgat
gcgatgtccgacgtttatgccaccatcgcgatggcgaaactatttaagcaggcgcaaccc
aagctatttgagtatctgttcctactgcgtaataaaaataaaatttccgcgctgatcgat
attccgcaaatgaaaccgcttgttcacgtttccggcatgtttggtgcagcgagaagcaac
accagttgggttgtaccgctcgcctggcacccggacaaccgtaatgcggtcatcatgtgc
gatctggcgggggatatgacaccgctgttggaattggacagcgagacattgcgtgaacgg
ttatatacccgtcgggatgcgcttgaagccgatcagagcgcggttccactcaagctggtg
cacatcaataaatgtccagtattagcacctgccaacactttacggcccgaagacgcggaa
agattgggcatcgaccgtcaacgttgcctggataatctggcgctgctgcgcaacgacgcg
agcgttagggaaaaagtggtcgagctgtttgccgaagcccccgcatttgtcgcgtctgat
gatgttgatttacggctttatgatggcttctttggcgatgccgaccgtatggcgatgaaa
attattcaggaaaccgcgccgcagaatctccccgcgttggatctcacgtttgccgataat
cggctggaaccgctatttttccgctatcgtgcccgcaatttccccggcacgctggatgac
cgcgaacagcagcgctggctgcaacatcggcgtgcggtatttacgccggaacgattgcag
tcttacctgtcagaactcagcgatctgtatcagcttcatgaagacgataaagagaagatg
gcgcagctcaaagcactgtacgcttatgcgcaggaattggtgggatag
DBGET
integrated database retrieval system
