Pectobacterium punjabense: E2566_09545
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Entry
E2566_09545 CDS
T06530
Symbol
ldtD
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
ppuj
Pectobacterium punjabense
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ppuj01002
]
E2566_09545 (ldtD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppuj01011
]
E2566_09545 (ldtD)
Peptidases and inhibitors [BR:
ppuj01002
]
Cysteine peptidases
Family C82
E2566_09545 (ldtD)
Peptidoglycan biosynthesis and degradation proteins [BR:
ppuj01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
E2566_09545 (ldtD)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
QJA20144
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Position
2104841..2106583
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AA seq
580 aa
AA seq
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MLLLHKRKMVRLMLRVGCIWVGSLSPSFSVLSASPTVVSGLSQSTGVVSVEKSRAGLLAA
LPHGMTVHYLSDLSSLYAQHQMQPMWADNRAVQQFQQQLAELAIAGVQPQFTTWVTLLTD
PQLTGFARDVVLSDAMLGYLQFVSGVERNGNDWLYSSVPYRLQSPALNIVSQWQQAVKSG
TSAAYVVSLAPQHSQYAKMHEALKTMLTDTRPWPNLNLAESLRPEQQSRELVVLREILQR
TGMLSSTESITLFNENVAATTTSLTAQTSVVDGAINTDDLYTGELVEAVKRFQHWQGLED
DGVIGKRTRDWLNVSPQMRATLLALNIQRLRLLPDNVHTGIMVNIPNYSLIYYQDGAERL
SSRVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLTRQDIIPKVVRDPGYLQRHGYTVLS
GWSQDAEAIDPSMIDWQGVSAERFPYRLRQAPGANNSLGRYKFNMPNSEAIYLHDTPNHN
LFQRDIRALSSGCVRVNKASELANMLLQDAGWNNSRISSTLDQGNTTFVSMKHRIPVNLY
YLTAWVAEDGKPQFRTDIYNYDDTARAGTKVLSKAGLLLQ
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgttacataaacgaaaaatggtcaggctgatgttgcgcgtgggttgtatttgg
gtaggaagcctgtctccttcgttttcggtgctgtcagcgtctccgacggtggtgtctggg
ttatcacaaagcacgggcgtggtttctgtcgaaaagagtcgggcagggcttttggctgcg
ctgccacacggcatgacggtacattatctctctgatttatcatcactttatgctcagcat
cagatgcagccgatgtgggcagataatcgcgccgttcaacagtttcaacagcagcttgcc
gaattggcgatagcgggtgtgcagccacagttcaccacgtgggtgaccttgctgaccgat
cctcaattaaccgggtttgcgcgtgatgtcgtgctatcagatgcgatgctgggttatttg
cagttcgtctctggcgtggagcgtaatggcaatgattggctgtacagcagcgtgccttat
cgtctgcaatcgcctgcgttgaatatcgtatctcaatggcaacaggccgtgaaatccggc
accagtgcggcctatgtggtttcgctggctccgcagcactcacagtacgccaaaatgcat
gaggcgctgaagacgatgctgactgacacgcgtccgtggccgaatctcaatctggcggaa
tctctgcgcccggaacagcagagccgtgaattggttgtgctgcgtgagattttgcaacgt
actggcatgttgtcgtcaacggagagcatcacgctttttaatgaaaatgtcgccgcaacg
accacgtcgctaaccgcgcaaacctctgtcgtcgatggcgctatcaatacagacgatctt
tacacgggtgaactggttgaagcggttaagcgcttccagcactggcaagggctggaggat
gatggcgtgattggtaaacgcacgcgtgattggcttaatgtttctccgcaaatgcgagca
acgctgctggcattgaatatccagcgtctgcgcctgttaccggataatgttcataccggt
attatggtgaatatccccaattactcactcatttattatcaggatggtgctgaacgttta
tcatcgcgcgtcattgtcgggcaaccgaaacgtaagacgccgctaatgagcagctcgctg
tataacgtagtggtcaatccgccgtggaatgtccctacgacgctgacccgacaggacatt
attcctaaagtggtgcgcgatcccggttatttgcagcgccatggctatacggtgctgtcc
ggctggagccaggatgcagaagcgattgatccctcaatgattgattggcagggcgtgtcg
gcagagcgcttcccctatcgcctgcgtcaggcacctggggcaaacaattcgctggggcgt
tataagtttaatatgccgaattcagaagcgatttatctgcacgacacgcctaatcataac
ctgtttcaacgtgatatccgggcgctgagttctggttgcgtgcgggtcaataaggcatcg
gaactggctaacatgctgctacaggatgctggttggaataatagccgcatttcttctacg
ctggatcagggaaatacgacttttgtttcaatgaagcatcggattccggttaatctctat
tacctgacggcgtgggtcgcggaagatggtaaaccgcagttccgaacagatatttacaat
tatgatgataccgcccgtgccgggacgaaagtgctatccaaagcagggctgttgcttcag
taa
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