Pectobacterium punjabense: E2566_10750
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Entry
E2566_10750 CDS
T06530
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppuj
Pectobacterium punjabense
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppuj03032
]
E2566_10750 (topA)
03400 DNA repair and recombination proteins [BR:
ppuj03400
]
E2566_10750 (topA)
Enzymes [BR:
ppuj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E2566_10750 (topA)
DNA replication proteins [BR:
ppuj03032
]
Prokaryotic type
DNA Topoisomerases
E2566_10750 (topA)
DNA repair and recombination proteins [BR:
ppuj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E2566_10750 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
QJA20369
LinkDB
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Position
2361454..2364054
Genome browser
AA seq
866 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSVSKKSADSATKDKTKKKV
KKDEKSALVNRMGVDPYHGWKANYEILPGKEKVVSELKTLAENADHIYLATDLDREGEAI
AWHLREIIGGDDRRFSRVVFNEITKNAITQAFEKPDTLNIDRVNAQQARRFMDRVVGYMV
SPLLWKKIARGLSAGRVQSVAVRLIVDREREIKAFVPEEYWELHADLLAGSDIQLQMQVT
HHNGKPFKPVNKDQTHAAVSLLENARYVVADREDKPTSSKPGAPFITSTLQQAASTRLGF
GVKKTMMMAQRLYEAGYITYMRTDSTNLSQDALTMVRGYISEEFGKRYLPEAATVYSSKE
NSQEAHEAIRPSDVGVLADNLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLIVEAAD
YQLRAKGRTLRFDGWTKVMPALRKNDEDRTLPSVAVGEALSLQKLLPGQHFTKPPARYSD
ASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMN
YDFTARMESRLDQVANNQAEWKAVLDEFFDEFSQQLEKAEQDPEEGGMRPNAMVLTSIDC
PTCSRQMGIRTASTGVFLGCSGYALSPKERCKTTINLIPETEVLNVLEGDEAETNALRAR
RRCGKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEAGEFRIKGYDGPIVECEKCGSEMH
LKMGRFGKYMACTGETCSNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGV
FLAANTFPKSRETRAPLVEELVRFKDRLPEKLRYLAEAPVVDKDGNKTQVRFSRKTKQQY
VSSEKDGKATGWSAFYIDGKWVEGKK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgattaataagtat
ttaggcaatgactacgtggtgaaatccagcgtcggtcatgtgcgcgatttgccgacgagt
ggctcagtcagtaaaaagagcgcggactcagcgactaaagataaaacgaaaaagaaagtc
aaaaaggatgaaaaatctgcgctggttaatcgtatgggcgtcgatccttatcatggttgg
aaggctaactacgaaatactgccgggtaaggagaaggttgtctccgaactaaaaacactg
gcggaaaatgctgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccatt
gcctggcacctgcgggaaatcattggtggtgacgatcggcgtttcagtcgcgtggtgttt
aacgaaatcacgaaaaatgccattacgcaggcgtttgaaaaaccagacacgttgaatatt
gaccgggttaatgcacagcaggcgcgtcggtttatggatcgcgtagtgggttacatggtt
tccccactgttgtggaaaaaaattgcgcgtggcctgtctgccggacgcgtgcagtcggtt
gcggtgcgtctgattgtcgatcgcgagcgtgaaattaaagcgttcgtgccggaagaatat
tgggaattgcacgccgacttgctggcgggcagcgatattcaactgcaaatgcaggtaacg
caccacaacggcaaaccgtttaagcccgttaataaagatcaaacgcatgcggcggtcagc
ctgcttgaaaacgcacgctatgtggttgctgaccgtgaagataaaccgaccagcagcaaa
cccggtgcgccgttcatcacatcaacgctgcaacaagctgccagcacacgcctcggtttt
ggtgtgaaaaagaccatgatgatggcgcagcgtctgtacgaagcgggctacattacctat
atgcgtaccgactccacgaacctcagtcaggatgcattgacgatggtgcgtggttatatc
agcgaagaattcggcaagcgctatctgccagaggcggcaaccgtctacagcagcaaagaa
aattcgcaggaagcgcacgaagccattcggccttctgatgtgggtgtgttggctgacaac
ctgaaagatatggaagccgatgcgcagaagctgtatcagctgatttggcgtcagttcgtc
gcctgtcaaatgacgccagcgcaatacgactccaccacgctaatcgtggaagcggcagat
tatcaactgcgtgccaaaggccgtacgctgcgttttgatggctggacgaaagttatgccc
gcgctgcgtaaaaatgatgaagatcgtacattgccgagtgtggcggtgggcgaagcgcta
tcgttacagaaactgctgccagggcaacacttcaccaaaccgccggcacgttacagcgat
gcttctctggttaaagagctggaaaaacgcggtattggtcgcccttcaacctacgcttca
attatttcaaccattcaggatcgcggctatgtacgggtggaaaatcgccgtttctacgct
gagaaaatgggggaaatcgttaccgatcgcctggaagaaaacttccgtgaattgatgaac
tacgatttcaccgcgcggatggaaagccgtctcgatcaggttgctaataatcaggcggaa
tggaaagccgtgctggatgaattcttcgacgaatttagccagcagttggaaaaggcagaa
caggaccctgaagaaggcggtatgcgccccaatgcgatggtgttgaccagcattgactgc
ccgacctgctctcgtcagatgggaattcgtaccgccagtactggggtgtttctgggctgt
tctggctatgcactgtcgccgaaagagcgctgtaaaaccacgatcaatctgataccagaa
actgaagtgctgaacgtgttagaaggtgatgaggccgaaactaatgcgctgcgtgctcgt
cgtcgctgtggaaaatgtggtacggcgatggacagctacctgattgataatcagcgtaaa
ctgcatgtttgcgggaataatccagcctgtgatggctatgagatcgaagcgggcgaattc
cgcatcaaaggctatgatggtccgatcgttgagtgtgagaaatgtggttccgaaatgcat
ctcaaaatggggcgcttcggtaaatacatggcgtgcaccggcgaaacgtgcagtaacacg
cgtaagatcctgcgtaatggcgatgttgcgccaccgaaagaagatcccgtgccgctgcct
gagctgccttgtgagaagtccgatgcgtatttcgtattgcgcgacggtgcagcaggggtg
ttccttgccgccaatacgttcccgaaatctcgtgaaacgcgggcaccactagtagaagaa
ctggtgcgatttaaagatcgtttgccagaaaaactgcgctatttggccgaggcgccggtg
gtcgataaagatggtaataaaacgcaggtgcgtttcagccgtaagaccaaacagcaatat
gtctcgtcagaaaaagacggcaaggcaacgggctggtcggcgttttatattgacgggaaa
tgggttgaagggaagaagtaa
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