Pectobacterium punjabense: E2566_14935
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Entry
E2566_14935 CDS
T06530
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppuj
Pectobacterium punjabense
Pathway
ppuj00040
Pentose and glucuronate interconversions
ppuj01100
Metabolic pathways
ppuj02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
E2566_14935
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
E2566_14935
Enzymes [BR:
ppuj01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
E2566_14935
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Glyco_hydro_43
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
QJA21123
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Position
complement(3246761..3248329)
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AA seq
522 aa
AA seq
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MFRAVIGTGRLRACAVAIAFSGIALSGCDNSQQPVAETAPPDLQVKTAPFGWAAQYQNTD
GKFYATTGGEGAHENSIYVVTNRQELKEALNNTRSVRYIAGDADAELQAKLEPKIIYWQG
TIRGDDLGNGRYANAEDYKTKPNKTTFDFDLYVKAFDQNYMAQLKATADAGGADAVAASA
ELSLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSDAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGDKGNWNARYDSVSINASKNVWVDHCTFTDGEHPD
YQEPVLFGKHIQRHDGLLDIEDGADYLTISYNIFAQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFQGGAA
DEKLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSALQETEKAAATSAGKAVPGWAL
ETCTNELEWSPPYVYSVGKSIAAVEKYVLENAGAGKLEIALP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagagcagttattggaacgggtcgtttacgcgcctgtgcggtagctattgccttt
tctgggatagcactttctgggtgtgacaacagtcagcaaccagtggcagaaacggctccg
ccagacttacaggtgaaaactgcaccgtttggctgggctgcgcaatatcagaacacggat
ggtaaattttatgcgacgacgggaggtgagggtgcacatgaaaatagcatttatgtcgtt
accaatcgtcaagaattaaaagaggcgttaaataacacccgcagtgtccgttatattgca
ggtgacgccgatgcggagttacaggcaaagttagaacccaagattatctattggcaaggc
actattcgtggtgatgatttaggaaatggacgctatgcgaatgctgaggattataaaacc
aaaccgaataaaaccacgttcgattttgatttatatgttaaagcgttcgatcagaactat
atggcacaactgaaagcgacggcggatgccggtggcgctgatgcggtagccgccagtgca
gagcttagcctgttgaaaaaacagaatggtcagcgttcgcagtatgccaacaaccagaaa
gcacagattcaatttcaggttccgccgaataccacaattttaggtgtaggtagcgacgcg
aaactggtggaaggctacttatccctcaatacgttaagccacacgtttggcaaaacggat
aacagcaacatcattatccgtaatattacgtttcaggcgccgcgtgactttgccccagct
tgggatgcgggtgatggagataaaggcaactggaatgcgcgttatgattccgtatcgatt
aatgccagcaaaaatgtctgggtcgaccactgtacctttacagacggtgaacaccctgac
tatcaggagccggtgctgttcggtaaacatatccaacgccatgatggcctgctggatata
gaagatggggctgattatctgacgatttcctacaacattttcgctcagcatgacaagacg
gtcttaatcggctcaggcgatggtgataaaggggaatatcggatcacttttgaaggcaat
ttgtgggacaacagcgtgcagcgttcgccgcgagtgcgctttggtcaggtgcatttactt
aataactaccaccgtggcgcaacggatacaaattatcccattctgtatgccattgggatg
ggcttcgattcatcgattctttccgaaagtaatgtttttaatttccagggcggtgcggca
gatgaaaagctgattattggtgcctacaagggaagtaaatttaaagacaacggttcttgg
ttcaatggcaatccggcaagcaatctgaatcaaattgccttggataaatgtagtgcattg
caagaaaccgagaaagccgctgctaccagcgctggaaaagcggtaccgggatgggcgttg
gagacctgcaccaatgaattggagtggagtccgccttatgtctatagcgttgggaaatct
atcgccgctgttgagaaatatgtcctggaaaatgccggtgcgggaaagctggagattgcc
ctgccgtag
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