Pectobacterium punjabense: E2566_15875
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Entry
E2566_15875 CDS
T06530
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ppuj
Pectobacterium punjabense
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppuj03009
]
E2566_15875 (srmB)
Enzymes [BR:
ppuj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E2566_15875 (srmB)
Ribosome biogenesis [BR:
ppuj03009
]
Prokaryotic type
rRNA helicases
E2566_15875 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJA21295
LinkDB
All DBs
Position
3470321..3471646
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AA seq
441 aa
AA seq
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MTVTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLL
PVLQHLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTLLFSATLEGDAIKDFAERLLNEPVEVESDPSRRERKKILQWYYRADDLKHKTALLC
HQLKQPDVTRSIIFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRMSDGRVN
VLVATDIAARGIDINDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLL
GKISRYLNEPLKPRIIEELRPETKAPSAKTTGKPSKKVLAKRKEKKEKEKEKVKVKVRDR
DSKNIGKRRQPTQKTSEPTSE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccaatttctccgagctcgatcttgatgaaagcctgttagacgccctgcgt
gatatgggttatgaacgtccgactgcgattcaagccgaggcaatccctccggcaatggaa
ggccgtgacgtgctaggctccgcgccaacaggaacaggtaaaaccgccgcctatttgctg
ccggttttgcagcatcttatcgattttcctcgtaaaaaatcaggtccacctcgtattctg
atcctcacaccaacccgtgaactcgccatgcaggtagccgatcaggcgcgtgcattcgcg
gcacatacgcatctggatatcgccacgatcactggcggcgtggcctatatgaaccacgca
gaagtgttcagcgaaaatcaggatatcgtcgtcgcgacgactggccgtctgctgcaatac
atcaaagaagaaaacttcgattgccgcgcggtagaaacgctgattctagatgaagcggac
agaatgctggatatgggcttcgcccaggatattgaacacattgctggggaaacccgttgg
cgcaagcaaacgctactgttttctgcgacgctggaaggggatgcgatcaaggatttcgcc
gaacgtctgctcaacgaacccgttgaagtcgaatccgatccctctcgtcgggaacgtaaa
aaaattctgcaatggtattaccgcgccgacgatctcaaacacaaaacagccctgctctgc
catcagttaaaacagccagatgttacgcgttctatcatctttgtacgtaagcgtgagcga
gtgcatgagctggtagcctggctgcgtgaagctggcattaactcgtgctatctcgaaggc
gaaatggtgcaagctaagcgtaacgaagcgatcaaacgtatgagtgacggccgggttaac
gtgctggtggcaacagatatcgcagcgcgtggtattgatattaatgatgtcagccacgta
tttaacttcgacttaccgcgcaccgcagatacttaccttcaccgcatcggccgcaccggt
cgcgcgggtcgcaaaggctgtgccatctctttcgttgaagcgcacgatcatctgctactg
ggaaaaatcagccgttacctgaatgagccgctaaaaccacgcatcattgaggaactccgc
ccagaaaccaaagcgccaagcgccaaaacgacgggcaaaccgtcgaaaaaagtgctcgct
aagcggaaagagaaaaaagagaaggaaaaagaaaaagttaaagtgaaagttcgcgatcgc
gatagtaaaaacattggtaagcgtcgtcaacccacgcagaaaaccagtgagccgaccagc
gaataa
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