Pectobacterium punjabense: E2566_20210
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Entry
E2566_20210 CDS
T06530
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppuj
Pectobacterium punjabense
Pathway
ppuj03420
Nucleotide excision repair
ppuj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E2566_20210 (uvrD)
03430 Mismatch repair
E2566_20210 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuj03400
]
E2566_20210 (uvrD)
Enzymes [BR:
ppuj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E2566_20210 (uvrD)
DNA repair and recombination proteins [BR:
ppuj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E2566_20210 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
E2566_20210 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
QJA22065
UniProt:
A0ABX6L721
LinkDB
All DBs
Position
complement(4417222..4419384)
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AA seq
720 aa
AA seq
DB search
MDVSDLLDGLNDKQRDAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAV
TFTNKAAAEMRHRIDHLIGTSQGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIRALNLDEKQWPPRQAMWFINGKKDEGLRPQHIESYGNPIEQTWQRVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHVLNHYRERFTNILVDEFQDTNRIQYAWIRMLAGDS
AKVMIVGDDDQSIYGWRGAQVENIQLFLKDFVGAETIRLEQNYRSTSNILKAANALIAHN
GGRLGKNLWTDGVEGEPISLYCAFNELDEARYVVNRIKAWQEKGGALKDNAILYRSNAQS
RVLEEALLQQSMPYRIYGGMRFFERQEIKDSLSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQLTLWQATRALLQEKVLAGRAAASLQRFIELIDALAYETSELPLHVQ
TDRAIKDSGLWSMYEQEKGEKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAAL
EAGEGQADANQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMEKLTITYAESRRLYGKEAYHRPSRFVGELPEECVEEVRLRASVSRPVNHQRLG
TPVMQNDSGYKLGQRVRHAKFGEGTIVNLEGSGDHARLQVAFQGQGIKWLVAAYARLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgatctgctcgatggcctcaacgacaaacagcgcgacgcggtagccgca
cctcgcagcaatttattggtgctggcgggggcaggcagcggcaaaacgcgggtattggtc
catcgtatcgcctggctattgtctgttgaaaactgttcgccgtactccatcatggcggtg
acgtttaccaacaaagctgcggcggagatgcgccatcgaatcgaccatcttatcggtacg
agccagggtggcatgtggattggcaccttccacggattggcgcaccgtctgctgcgtgcg
caccatatggatgccaatttgccgcaggatttccagattctggacagtgaagatcagctg
cgtttgctgaaacggctgattcgggcgcttaatctggatgagaaacagtggccgccgcgt
caggcgatgtggtttatcaacggtaaaaaagacgaaggtttacgtccgcagcacattgaa
agctacggcaaccctattgagcaaacgtggcagcgtgtctatcaagcctatcaggaagcg
tgcgatcgcgccgggctggtggatttcgccgagctgctgctgcgcgcgcatgaactgtgg
ctgaataagccgcatgtgttgaaccactatcgtgagcgttttaccaatattctggtggat
gaatttcaggataccaaccgtattcagtacgcctggattcgcatgctggcgggtgatagc
gccaaggtcatgatcgtcggggatgacgatcagtcaatttacggctggcgcggtgcacag
gtcgaaaatattcagctgttcctgaaagatttcgtcggcgcagaaacaatccgtctggag
cagaactaccgttctaccagcaacatcctgaaagcggcgaatgccctgattgcgcacaac
ggcgggcggcttggcaagaacctctggacggacggtgtcgagggtgaaccgatttcgctt
tactgcgcgttcaatgaactggatgaggcacgttacgtcgtcaaccggattaaagcctgg
caggaaaaggggggggcgctgaaagataacgccattctgtatcggagcaacgcccagtcg
cgcgtactggaagaggcgctgttgcagcagagtatgccataccgcatctacggcgggatg
cgcttcttcgagcgtcaggaaatcaaagattcgctgtcttatctgcgcctgatcgccaat
cgtaatgacgatgcggcgttcgagcgtgtggtgaatacgccgacgcgcggtattggcgat
cgcacgctggacgtggtgcgccagacggcgcgcgatcgtcagctgacgctgtggcaagcc
acgcgtgcgctgttgcaggagaaggtgttggccggacgtgcggcggcatcgctgcaacgc
tttatcgaattgattgacgcgctggcctatgaaacctctgaactgccgctacatgtgcag
actgaccgagcgattaaagattctggcctgtggagtatgtacgaacaggaaaaaggcgag
aaagggcaggcgcgagtagaaaacctggaagaactggtgacggcgacgcgtcagttcagc
tatcaggaagaagatcaggatctgatgccgcttcaggcgtttctgtcgcatgccgcgctg
gaagcaggtgaaggtcaggcggatgccaatcaggacgccgtgcagctcatgacgctgcac
tcggcaaaagggttggaattcccgcaggtgtttatcgtcggtatggaagaaggcatgttc
cctagccagatgtcgctggatgaaggcggacgtctggaagaagagcgtcgtctggcttat
gttggcgtcacgcgtgcgatggaaaagctgacgataacctacgctgaatctcgccgttta
tacggcaaagaagcctatcaccgaccgtcacgatttgttggcgaactgcccgaagagtgt
gttgaagaggtacggttacgcgctagcgtctcccgtccggttaaccaccagcgcctcggt
acgccggtcatgcaaaatgacagcggttacaaattagggcagcgggttcgccatgcgaaa
ttcggtgaaggcaccatcgtgaatctggaaggcagcggcgatcacgcccgtcttcaggtc
gcgttccagggacagggtattaaatggctggtcgccgcctacgccagactggaaacggtg
tga
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