Pandoraea pulmonicola: RO07_02805
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Entry
RO07_02805 CDS
T03553
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppul
Pandoraea pulmonicola
Pathway
ppul03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RO07_02805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppul03400
]
RO07_02805
Enzymes [BR:
ppul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RO07_02805
DNA repair and recombination proteins [BR:
ppul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RO07_02805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
UvrD-helicase
SH3_13
AAA_22
SLFN-g3_helicase
Herpes_Helicase
DEAD
PhoH
nSTAND3
CbiA
T2SSE
TraI_hel_assoc_N
AAA_25
Flavi_DEAD
MukB
AAA_16
AAA_33
UvrD_C
AAA
FtsK_SpoIIIE
AAA_28
DUF4350
KTI12
Motif
Other DBs
NCBI-ProteinID:
APD13781
UniProt:
A0ABM6FTA7
LinkDB
All DBs
Position
complement(4596692..4598548)
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AA seq
618 aa
AA seq
DB search
MFGSGLCAPASLAFALAGDAQADAFPLLLDEHDRLYLARYYGYEARLAAALGRKLAAGGH
MSITPDDRARLRRYFGDGVLVGPDGKHEPNWQMAAAALALQRSLVVLSGGPGTGKTTTVV
GLLACLLERDANLRVALAAPTGKAAQRMQEALTARQDLPETVRQALPDAAVTLHRLLGVL
PESAEQVGRRFRHHAGNPLPYDLIVVDEASMIDLSMATQLLEAVPDGARLILLGDKDQLA
AVEAGAVFGELSAQRSFSPGMRARLLDALEWPQGEPPPPGPLASGEASRAARGLEDTVVW
LERNYRFGSHSAIGRLATAIKAGKVIEARREFTVADASASASVSVSTSASTLVKTESLEG
ANPQTTAADRVLLSEDGGIQLSPANLNALADGYAAYLDALADAVTMIGQLGDPAAATTAD
IAMVAQPVFAAFGRFRVLCATRGGRRGVEFLGAQLTTVLARRAGVALGAGGGAWFAGRPV
LVTQNEYALNLFNGDIGIALPLGPSGTLRVAFATPDGGYRLYSPASLPAHETAFAMTIHK
SQGSEFERVAIVLPEQASRVLSRELIYTGVTRARRQAWVCAPWQVIASAIARPTQRDGGL
TDRLTQVLATMPDPSGAR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
ctgttcggcagtggcctctgcgccccggcaagtctcgcatttgcccttgcgggcgacgct
caggcagacgctttccccttgttgctcgatgagcacgaccggctttatctggcgcgctat
tacggctacgaggcgcgtctggcggcggccctggggcgcaagctggcggcgggtggccac
atgtcgatcacgcctgacgatcgcgctcgtctgcgccgctatttcggcgatggcgtgctc
gtcggccccgatggcaagcacgaaccgaactggcagatggccgcggcggcactggcgctg
cagcgctcgttggtggtgctcagcggcggtccgggcacgggcaagacaacgacggtggtt
gggctgctggcatgtctgctggagagagacgctaacttgcgcgtcgcgctcgcagccccc
acgggcaaggcggcccagcgcatgcaggaagcgctgacggcgcgccaggatctgcccgaa
acggtgcgccaggcgttgcccgacgcggccgtgacgttgcaccgcttgctcggcgtgctg
ccggagtcggcggagcaggtgggcagacgcttccgtcaccacgcgggcaatccgctgccg
tacgacctgatcgtcgtggacgaggcgtcgatgatcgatctgtcgatggcgacgcagttg
ctcgaagccgtgccggatggcgcgcgtctgatcctgctcggcgacaaggaccaattggcg
gccgtggaggcgggggcggtgttcggcgaactgagtgcgcagcgctcgttctcgcccggg
atgcgggcgcggttgctggatgcgctcgaatggccgcaaggcgaaccgccgccgccgggg
ccgctggcctccggcgaggcgtcgcgcgcggcgcgggggctcgaggatacggtggtctgg
ctggagcgcaattatcgcttcggttcgcactcggccatcggccggctcgccacggcgatc
aaggcaggcaaggtcatcgaggctcgcagggagttcaccgtggcggatgcgtcggcatca
gcgtcggtatcggtatcgacatcggcatcgacattggtgaagacggaatcgctagaagga
gcaaacccgcaaaccacggctgccgatcgcgtactcctcagcgaggatggcggaattcag
ttgtcgccagcgaatctgaacgcgctcgccgacggctatgcggcatatctcgatgcactg
gccgacgcggtcacgatgatcgggcagcttggcgacccggccgcggcgacgacggcggat
atcgcgatggtggcgcaaccggtgttcgcggcatttggccggtttcgcgtgctgtgcgcg
acacggggcgggcgacgtggcgtcgagtttctcggcgcgcagctcaccacggtgctggcg
cgtcgcgcgggcgtcgccctcggcgcggggggcggcgcctggttcgccgggcgtcccgtc
ctggtaacgcaaaacgagtatgcactgaacctgttcaacggcgacatcggcatcgcgctg
ccgctgggcccgtcgggcacgttgcgcgtagcattcgcgaccccggacggcggctaccgt
ctctattccccggcgagtctgcccgcgcacgagacggcgttcgcgatgacgattcacaaa
tctcagggatcggaattcgagcgcgtggcgatcgtgctgccggagcaggcgagccgcgtg
ctctcacgcgagctcatttacaccggggtgacacgtgcacgccgtcaggcttgggtctgt
gcgccgtggcaggtgatcgcgtcggccatcgcgcgtccgacgcagcgcgatggtggactg
accgaccggctcacgcaggtgctcgctacgatgcctgatccgtcgggggcgcgataa
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