Pandoraea pulmonicola: RO07_03255
Help
Entry
RO07_03255 CDS
T03553
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
ppul
Pandoraea pulmonicola
Pathway
ppul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RO07_03255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppul03400
]
RO07_03255
Enzymes [BR:
ppul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
RO07_03255
DNA repair and recombination proteins [BR:
ppul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RO07_03255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
CorA
DUF4515
HIP1_clath_bdg
Motif
Other DBs
NCBI-ProteinID:
AJC19744
UniProt:
A0ABM5RWD4
LinkDB
All DBs
Position
complement(4702596..4703969)
Genome browser
AA seq
457 aa
AA seq
DB search
MNSTFDDIRHDRGADRVLSVSDLNKAVAGVLERSFPLAWVSGEISNFTRAASGHWYFSIK
DAQAQMRCVMFRGRAQHADFSPKEGDRVEVRALLSMYVPRGEVQLNVEAIRRAGQGNLYE
AFLRLKEKLSAAGLFDAARKRVLPRYARRVGVVTSLQAAALRDVLTTLARRAPHVAVVIY
PAPVQGADAASRLAAALDTANARREVDAILLCRGGGSIEDLWAFNEEVLAHAIARSELPV
VSGVGHETDFTIADFVADVRAPTPTAAAELISAARDECLREVDRERQRLTRAMGRLLEQR
AQQLDSLARGLVSPRERLARQRGELAHLGDRMRHALERPLAQRRNRFDMLRLRLARAVPD
VASQHERVALLAQRLQTAMSRRAERSAQRLSDAAAQLELLNPRRTLQRGYAAVLDSRGQP
VRDPRKLQRGQSVTMHLADGAADVGIGDVQVRLDDTF
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaactcaacttttgacgacattcggcacgatcgtggtgcagaccgcgtactgagtgtt
tcagatctgaacaaggccgtggccggcgtgctcgagcggagtttcccgttggcgtgggtc
agcggcgaaatttcgaacttcacgcgcgcggccagcggccattggtatttctcgatcaag
gacgcgcaggcgcagatgcgctgcgtcatgttccgcggccgcgcccagcatgccgacttc
tcgccgaaggagggcgaccgcgtcgaagtccgcgcgttgctctccatgtatgtgccgcgc
ggcgaggtgcagctcaacgtcgaggcaattcgtcgcgcggggcagggcaatctgtacgaa
gccttcctgcgtttgaaggaaaagctctccgccgccggattgttcgacgccgcccgcaag
cgcgtattgccgcgatatgcgcgccgcgtcggggtcgtcacgtcgttgcaggcggcagca
ttgcgcgacgtcctcacgacgctggcccgtcgcgcaccgcacgtggcggtcgtgatttat
cccgcgccggtgcagggcgccgatgcggcgtcgcgtctggcggccgccctcgatacggcc
aacgcgcgccgcgaagtggacgcgatcctgctgtgtcgcggcggtggttccatcgaggac
ctgtgggcgttcaacgaggaagtgctggcccacgcgatcgcgcgcagcgaactgcccgtg
gtttcgggcgtggggcatgaaaccgatttcaccatcgccgacttcgttgccgacgtgaga
gcgccgacgccgacggccgccgctgagctgatcagcgcggcgcgcgacgagtgtctgcgc
gaagtcgatcgcgaacgccagcgtctcacgcgcgccatggggcggctgctggagcaacgc
gcgcagcaactcgacagtctcgcgcgcggcctggtctcgccgcgcgagcgcctggcccgt
caacgtggcgaactggcgcacctgggcgatcgcatgcgtcatgcgctcgagcgcccactc
gcacaacggcgcaaccgtttcgacatgctgcggttgcgcctggcgcgcgccgtacccgat
gtcgcgtcgcagcacgagcgcgtggcgctgctcgcgcagcgactgcaaacggcgatgtcg
cgccgcgccgagcgatccgcgcaacggctgagcgatgccgctgcacagctcgaactcctc
aatccgcgccgcacgctccaacgcggctacgccgccgtgctcgacagccgcggacagccg
gtgcgcgatccacgcaagctgcagcgcggccagtcggtcacgatgcatctggccgacggc
gccgccgacgtgggcattggtgatgtccaggtcaggctagacgatactttttag
DBGET
integrated database retrieval system
