Pandoraea pulmonicola: RO07_05350
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Entry
RO07_05350 CDS
T03553
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ppul
Pandoraea pulmonicola
Brite
KEGG Orthology (KO) [BR:
ppul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppul03016
]
RO07_05350
Enzymes [BR:
ppul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RO07_05350
Transfer RNA biogenesis [BR:
ppul03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RO07_05350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
ADAMTSL1
Motif
Other DBs
NCBI-ProteinID:
AJC20038
LinkDB
All DBs
Position
complement(5162747..5164939)
Genome browser
AA seq
730 aa
AA seq
DB search
MSPIAIDGCFMNIFFEESGGFKAGTVLSQQGESYQVELPGGRRSKIKGRDVLLRFESPTP
AELIAQAQAAAQEIDMSFLWECAPAEEFPFPALAAEYFGEGASAAQQAGLALALQASPIY
FRRKGRGQYQRAPQEQLQAALAGLARKQQQAELQASYADQLIAGTLPDALRGKELALLFR
PDKNAIEWKALDAAAIALGKTHAEVMLACGGISSPRAYHEAAFLYEYFPRGTGFPDVGVP
PVPTEALPLADVQAFSIDDSTTTEIDDALSVQLLPDGLMRVGIHIAAPALGIARGDAIDE
IARVRLSTVYAPGEKITMLPDAVVEAYTLAEGGARPALSLYVVVKADTYEIVATETRAEL
VPISANLRHNELDSIITAETLADGSGDYPHKEELRLLWPFAQSLYDKRQAARVGYGLRPE
VQNKTDFNFYVDGERVEIKQRMRGAPLDLIVAEMAILANSRWGRLLAECGVPGIYRAQRA
YGVNRTRMQTSPAPHEGLGVEQYAWSTSPLRRYVDLVNQWQLLACVRHGVTAKLAAPFKP
KDADLYATVSSFEAAYAAYAEHQSRMERYWCLRWLLQENRSQVQASVLKGDTVRLNEIPL
TLIVPGLGPHARGTQIMLDILSLDVVTLGISVRIAQVLGTGQTALADDDDEGEGGEGDGG
EGQNGEEGGSNTEGGDGSEGNDGNDGTGSGDGDGRDAAAASDVPDAADASPLAAALMAAQ
PRDTSTNAAC
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atatcgcctattgcgatcgatggctgtttcatgaatattttttttgaggaatccggcggc
ttcaaggccggcacggtgttgtcgcagcagggcgagtcgtatcaggtggaactgcctggc
gggcgtcgcagcaagatcaagggacgcgacgtgctgttgcgcttcgaatcgcccacgccc
gccgagctgatcgcgcaggcccaggccgcggcccaggaaatcgacatgagtttcctgtgg
gagtgcgcgcccgccgaagaatttcccttcccggcgctcgccgccgaatacttcggcgaa
ggcgcgagcgcggcgcaacaggctggcctggcgctggcgctgcaagcttccccgatctac
ttccgccgcaagggccgcggtcaatatcagcgtgcgccgcaggagcagttgcaggcggcg
ctcgcaggtcttgcccgcaagcaacagcaggccgagctgcaggcaagctacgccgatcaa
ctgatcgcgggcacgctgccggacgccttgcgcggcaaggagttggccctgctgttccgt
ccggacaagaacgcgatcgaatggaaggcgctcgacgccgccgcgattgcgctcggcaag
acgcacgccgaagtgatgctcgcctgtggcggcatttcgtcgccgcgtgcttatcacgag
gcggcgttcctctacgagtacttcccgcgcggtaccggcttcccggacgtcggggtgccg
ccggtaccgaccgaagcgcttccgctggccgacgtgcaggcattctccatcgacgattcg
acgaccaccgaaatcgacgacgcgttgtcggtgcaattgctgccggacggtctcatgcgc
gtggggatccacatcgcggcgccggcgctcggcatcgcgcgcggcgacgccatcgacgag
atcgcccgcgtacggctgtccaccgtgtacgcaccgggcgagaagatcacgatgctgccc
gacgccgtggtggaggcctacacgctcgccgagggcggtgcgcgcccggcgctgtcgctc
tatgtggtcgtcaaggcggacacatacgagatcgtcgccaccgaaacgcgcgccgaactc
gtgcccatttccgcgaaccttcgacacaacgagctcgactcgatcatcacggccgagaca
ctggccgacggcagcggcgactatccgcacaaggaagaactccgtctgctgtggccgttc
gcacagtcgctgtacgacaagcgtcaggcggcgcgggtcggctatggcctgcgtccggaa
gtccagaacaagaccgacttcaacttctatgtcgatggcgagcgcgtcgagatcaagcag
cgcatgcggggcgcgccgctcgatctgatcgtcgcggagatggcaattctcgcgaacagc
cgttggggacgattgctcgccgagtgcggtgtgcccggcatctaccgtgcgcagcgcgcc
tacggcgtgaatcgcacgcgcatgcagacgtcgccggcgccgcatgaagggctcggtgtt
gagcagtacgcgtggagcacgtcgccgctgcgccgttacgtcgatctggtcaaccagtgg
caactgctcgcatgcgtgcgccacggcgtgacggcgaagctcgcggcgccgttcaagccc
aaggacgccgatctctacgctacggtgtcgagcttcgaagccgcctatgccgcctacgcg
gagcatcagagccgcatggagcgctactggtgcctgcgctggctgctccaggagaaccgt
tcgcaggtgcaggcgagcgtgctcaagggcgacacggtgcggctgaacgagattccactc
acgctgatcgtgccgggtctcggcccgcatgcgcgcggcacgcagatcatgctcgatatc
ctgtcgctcgacgtcgtcacgctcggcatttcggtgcgcatcgcgcaggttctcggcacg
gggcagaccgcgttggccgacgacgatgacgaaggtgagggcggtgagggcgatggcggc
gaaggccagaacggcgaggaaggcggcagcaataccgaggggggcgacggtagcgaaggc
aacgacggcaatgatggaaccggtagcggtgacggcgatggtcgcgatgccgccgccgcg
tccgatgttcccgatgccgccgacgcatcgccgctggcggccgcgctgatggccgcgcag
ccgcgcgatacgtcgacaaacgccgcgtgctga
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