Pandoraea pulmonicola: RO07_07025
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Entry
RO07_07025 CDS
T03553
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppul
Pandoraea pulmonicola
Pathway
ppul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RO07_07025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppul03021
]
RO07_07025
03400 DNA repair and recombination proteins [BR:
ppul03400
]
RO07_07025
Enzymes [BR:
ppul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RO07_07025
Transcription machinery [BR:
ppul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RO07_07025
DNA repair and recombination proteins [BR:
ppul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RO07_07025
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RnfC_N
UbiD
BSH_YknX
DNAPolymera_Pol
Motif
Other DBs
NCBI-ProteinID:
AJC20286
UniProt:
A0AAJ4ZDM6
LinkDB
All DBs
Position
complement(5526939..5531045)
Genome browser
AA seq
1368 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRPTVHKVPFLLATQLASYTSFLQADALASERKPEGLQAAFSSI
FPIVSHNGFARLEFVSYVLGTPAFDVKECQQRGLTFCSALRAKVRLVILDKESPNKPVVK
EVKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFKLMPE
GAQMEFVPERLRGEVARFDITDREGKVIVQKDKRVNAKHIRDLENANTKFISVPEDYLLG
RVLAKNVIDGDTGEVIANANDEITESVLAKLRESDVSDIQTLYTNDLDQGSYISATLRID
ETADKTAARIAIYRMMRPGEPPTEDAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGRDEV
LGPMTLTDDDILATIKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
VDGKVTDQIDYLSAIEEGRYVIAQANASIGGQGELTDELVSAREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT
TVQAFRGGVVDYVDAGRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVEVG
DKVARGDVIADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
GYRLDLNDQLRIVEGDAFQRLERFLVGKTANGGPKKLAKGTKLTKEYLADLDRYHWFDIR
LADDEGAQQLEQIKESIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADIVLNPLGVPSRMNVGQILESHLGWAA
KGLGWRIGEMLQAHTKVQEIRKFLTKIYNESGQQEDIDSLSDDEVMALARNLQNGVPFAT
PVFDGAHEDEIRRMLDLAFPDEIAKELGMTPSKNQVTLFDGRTGEAFERPVTCGFMHMLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERG
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcactattccttcaccgagaagaaacgcattcgcaagagttttgcgaagcgtccgacc
gtgcacaaggtgccgtttttgctggccacccagctcgcctcgtacacatcgttcttgcaa
gccgacgcgcttgcatcggagcggaagccggagggtctgcaagcagccttctcctccatt
ttcccgatcgtttctcacaacgggttcgcacgcctggagtttgtcagctatgtgctcggc
actcccgcgttcgatgtcaaggaatgtcaacagcgcggcctgaccttctgctcggctctg
cgcgccaaggttcgtctggtgattctcgacaaggaatcgccgaacaagccggtagtgaag
gaagtcaaggaacaggaagtgtacatgggcgaaattccgctcatgacctccacgggttcc
ttcgtcatcaatggcacggaacgtgtcatcgtctcgcagttgcaccgttcgccgggtgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggcaaactgctgttctccgcgcgt
atcatcccttaccgcggctcgtggctcgacttcgaattcgatccgaaggacatcctgtac
ttccgcgtcgaccgccgtcgcaagatgccggtcacgattctgctcaaggccattggtctc
acgccggaacagatcctcgcgaacttcttcgtgttcgacaacttcaagctgatgccggaa
ggcgcgcagatggagttcgtgccggagcggctgcgcggtgaagtcgcgcgcttcgacatc
acggatcgcgaaggcaaggtcatcgtccagaaggacaagcgcgtcaacgccaagcacatc
cgcgatctggagaacgccaacaccaagttcatctcggtgccggaagactacctgctcggc
cgtgtgctcgcgaagaacgtgatcgatggcgacaccggcgaagtgatcgccaacgccaac
gacgaaatcaccgaaagcgtgctggcaaagctgcgcgagtcggacgtgtcggacatccag
acgctgtacacgaacgatctggaccagggctcgtacatctcggccacgctgcgcatcgac
gagaccgccgacaagacggccgcgcgtatcgcgatctaccgcatgatgcgcccgggcgag
ccgccgaccgaagatgcggtggaggcactgttcaaccgtctgttctacagcgaggaagcg
tacgacctgtcgaaggtgggtcgtatgaagttcaaccgtcgtgtgggccgtgacgaagtg
ctcggaccgatgacgctgacggacgacgacattctcgcgacgatcaagatcctggtggat
ctgcgcaacggccgcggcgaagtcgacgatatcgatcacctcggcaaccgtcgcgtgcgt
tgcgtgggcgagctggccgagaaccagttccgcgccggtctcgtgcgtgtcgagcgtgcc
gtgaaggaacgtctgggtcaggccgagtcggaaaacctgatgccgcacgacctgatcaac
agcaagccgatctcgtcggccattcgcgagttcttcggttcgtcgcagctctcgcagttc
atggaccagaccaacccgttgtcggaaatcacgcacaagcgtcgcgtttccgcactgggc
ccgggcggtctgacgcgcgagcgtgccggcttcgaagtgcgcgacgtgcatccgacccac
tacggtcgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactcg
ctggccctgtacgcccgcctgaacgaatacggcttcctcgagacgccgtaccgcaaggtg
gtggacggcaaggtcaccgaccagatcgactacctgtcggccattgaagaaggccgctac
gtgatcgctcaggcgaacgcctcgatcggcgggcaaggcgagctgaccgacgaactcgtg
tcggcgcgtgaagccggcgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcgccgtcgcagatcgtctcggtcgccgcctcgctgattccgttcctcgagcacgat
gacgcgaaccgcgcattgatgggttcgaacatgcagcgccaggccgtgccttgcctgcgt
ccggaaaaggcggtcgtgggtacgggtatcgaacgtacggtggctgtcgactcgggtacg
accgtgcaggcgttccgtggcggtgtggtcgattacgtcgacgcaggccgtgtggtgatt
cgcgtgaacgatgacgaagccgtcgccggtgaagtcggcgtggacatctacaacctgatc
aagtacacgcgttcgaaccagaacaccaacatcaaccagcgcccgatcgtggaagtgggc
gacaaggtggcgcgcggcgatgtgatcgctgacggcgcgtcgaccgatctgggcgagctg
gcgctgggtcagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaggat
tcgatcctgatctcggagcgtgtcgttgcggaagaccgctacacgtcgatccacatcgaa
gagctcaacgtggtcgctcgcgacacgaagctcggacccgaggaaatcacgcgcgacatc
tcgaacctggcggaagtgcaactgggccgtctggacgagtcgggcatcgtgtacatcggc
gccgaagtcgaagccggcgacgtgctcgtgggcaaggtcacgccgaagggcgaaacccag
ctcacgccggaagaaaagctgctgcgcgcgatcttcggcgagaaggcttcggacgtgaag
gacacctcgctgcgtgtgccctcgggcatgagcggcaccgtcatcgacgtgcaggtgttc
acgcgtgaaggcatccagcgcgataagcgcgcccagcagatcatcgacgatgaactgaag
ggctatcgcctggacctgaacgaccagttgcgtatcgtggaaggcgacgcgttccagcgt
ctggagcgcttcctggtgggcaagaccgcgaacggcggtccgaagaagctcgccaagggc
accaagctgaccaaggaatacctggccgatctcgatcgctaccactggttcgacatccgc
ctggccgatgacgaaggcgcccaacagctcgagcagatcaaggaatcgatcgagcagaag
cgtcaccagttcgacctggctttcgaagagaagcgcaagaagctcacgcagggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtctacctggcggtcaagcgtcgtctgcag
cctggcgacaagatggccggccgtcacggtaacaagggcgtggtctcgaagatcgtgccg
atcgaggacatgccgtacatggccgacggccgtccggccgacatcgtgctcaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcagattctcgaatcgcacctcggctgggcggcg
aagggtctgggttggcgtatcggcgaaatgctgcaggcgcacaccaaggtccaggaaatt
cgcaagttcctgacgaagatctacaatgagagcggtcagcaggaagatatcgacagcctg
tcggacgacgaagtgatggcgctggcgcgcaacctgcagaacggcgtgccgttcgcaacg
ccggtgttcgacggtgcgcatgaagacgaaatccgtcgcatgctggacctggcgttcccg
gacgagatcgccaaggaactgggcatgaccccgtcgaagaaccaggtcacgctgttcgac
ggccgtaccggtgaagccttcgagcgtccggtcacgtgcggcttcatgcacatgctcaag
ctgcaccacctggtcgacgacaagatgcacgcacgttcgaccggtccgtactcgctggtg
acgcaacagccgttgggcggtaaggcccagttcggtggtcagcgcttcggtgaaatggaa
gtgtgggcgctggaagcgtacggcgcatcgtatgtgctgcaggaaatgctgaccgtgaag
tcggatgacgtgacggggcgtacgaaggtgtacgagaaccttgtcaagggcgatcacgtg
atcgatgccggcatgccggagtcgttcaacgtgctggtcaaggaaatccgttcgctcggt
atcgatatcgacctggagcgcggttaa
DBGET
integrated database retrieval system
