Pandoraea pulmonicola: RO07_07275
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Entry
RO07_07275 CDS
T03553
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppul
Pandoraea pulmonicola
Pathway
ppul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RO07_07275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppul03019
]
RO07_07275
Enzymes [BR:
ppul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RO07_07275
Messenger RNA biogenesis [BR:
ppul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RO07_07275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UTP25_NTPase-like
CARD_2
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AJC20319
UniProt:
A0AAJ4ZD98
LinkDB
All DBs
Position
complement(5582525..5584180)
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AA seq
551 aa
AA seq
DB search
MSFETLGLSADILRAVTELGYTRPTPIQLQAIPAVLQGGDLLAGAQTGTGKTAGFTLPIL
QMLSSRQRPAAANGKRPVRALVLTPTRELAAQVEESVTQYGKYLRLSSMTVFGGVSMVPQ
VKQLARGVDILVATPGRLLDHMQQKTVDLSSVEILVLDEADRMLDMGFIRDIRRVLAALP
ARRQNLLFSATFSDEIKQLADGLLKSPALIEVARRNTTAETVAQKIHPVDRERKRELLEH
LVREHNWFQVLVFTRTKHGANRLAEQLTKGGIPALAIHGNKSQGARTRALAEFKSGTLQV
LVATDIAARGIDIDQLPHVVNFDLPEVAEDYVHRIGRTGRAGANGEAVSLVCVDEHQLLT
QIERLIKRTIEREVIPGFEPDPNAVPQPIRKNQNGGGRGAGGGRGARNDAQSPRTPRESR
EPREGGRGGRQGGEPGKARREGERGGRNAGNGNNAINVANVGNGNRAGTVGQGARQQAPK
RPGDAQRTPARATPGNGAPQQGRGAHNASRGQGGGNGGGGGERGDFGQRGPRPARRDGAG
GALLMGKSKRD
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaaacgctcggcctgtcggccgacatcctgcgggcagtcactgagcttggc
tacacccgcccgaccccgattcaactccaggcgattccggccgtcctgcaaggcggcgat
cttctcgccggcgcccagaccggcaccggcaagacggcaggcttcacgctgcccatcctt
caaatgctgtcctcgcgtcagcgtccggcggccgccaacggcaagcgcccggtgcgcgcg
ctcgtgctcacgcccacgcgtgagctggccgcgcaggtcgaggaaagcgtcacccaatac
ggcaagtatctgcgcctgagctccatgacggtgttcggcggtgtgtcgatggtgccgcag
gtcaagcaactcgcacgcggcgtggacatcctcgtcgccacgccgggacgcctgctcgat
cacatgcaacagaagaccgtcgatctgtccagcgtcgagatcctcgtgctcgacgaggcg
gaccgcatgctcgacatgggcttcatccgcgacattcgccgcgtgctcgccgcgctgccg
gcgcggcgtcagaacctgctgttctccgccacgttctcggacgagatcaagcaactggcc
gacggcctgctcaagtcgcccgcgctcatcgaagtggcgcgccgcaacaccacggcggag
accgtcgcgcagaagattcacccggtcgatcgcgagcgcaagcgcgaactgctcgagcac
ctcgtgcgcgagcacaactggtttcaggtgctcgtctttacgcgtaccaagcacggcgcg
aaccgtctggccgagcaactgaccaaaggcggcatcccggccctcgccattcacggcaac
aagagccagggcgcccgtacgcgcgcgctggccgagttcaagagcggcacgttgcaggtg
ctcgtggcgaccgatatcgccgcgcgcggcatcgacatcgatcaactgccgcacgtcgtc
aacttcgacttgccggaagtggctgaagattatgtgcaccgtatcggccgtaccggtcgc
gcgggcgccaacggcgaggcggtgtcgctcgtgtgtgtcgacgagcaccagctgctcacg
cagatcgagcgcctcatcaagcgcacgatcgagcgcgaagtgatcccgggcttcgagccc
gatccgaatgccgtgccgcagccgatccgcaagaatcaaaacggcggcgggcgcggtgcc
ggcggtggccgaggcgctcgcaacgacgcgcagtcgccgcgcacgccgcgcgagtcgcgg
gagccccgtgagggcggccgtggcgggcgtcagggcggcgagccgggcaaggcgcgtcgc
gagggcgaacgcggtggtcgcaacgcaggcaacggcaacaatgccatcaacgttgctaac
gttggaaatgggaaccgtgccggcaccgtcggacaaggcgcgcgtcagcaagcgccgaag
cgtccgggcgatgcgcagcgtacgcccgcgcgggcgacgccgggtaacggtgcgccgcag
cagggccgtggtgctcacaatgcctcgcgcgggcaaggcggtgggaacggcgggggcggg
ggcgagcgcggcgacttcggtcagcgcggcccgcgtcccgcacgtcgcgacggggccggt
ggcgccctgttgatgggcaaatcgaagcgagactaa
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