KEGG   Pandoraea pulmonicola: RO07_24580
Entry
RO07_24580        CDS       T03553                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
ppul  Pandoraea pulmonicola
Pathway
ppul03030  DNA replication
ppul03410  Base excision repair
ppul03420  Nucleotide excision repair
ppul03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RO07_24580
   03410 Base excision repair
    RO07_24580
   03420 Nucleotide excision repair
    RO07_24580
   03440 Homologous recombination
    RO07_24580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppul03032]
    RO07_24580
   03400 DNA repair and recombination proteins [BR:ppul03400]
    RO07_24580
Enzymes [BR:ppul01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RO07_24580
DNA replication proteins [BR:ppul03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RO07_24580
DNA repair and recombination proteins [BR:ppul03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     RO07_24580
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RO07_24580
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: AJC22840
UniProt: A0AAJ4ZGF6
LinkDB
Position
complement(3819976..3822714)
AA seq 912 aa
MSEQQSLEGKTLLLVDGSSYLYRAYHALPDLRGPNGEPTGALHGIVNMLRRMRKDVHAEY
SACVFDAKGKTFRDDWYPEYKANRPSMPDDLRLQIEPIHEAVRAMGWPLLMIDGVEADDV
IGTLARRATEFGMRVIVSTGDKDLAQLVNDRVTLVNTMTNETLDVAGVTAKFGVPPERIV
DYLTLVGDTVDNVPGVEKCGPKTAVKWLTQYGDLDNLVANAAEVKGAVGENLRRALDWLP
MGRKLVTVALDCDLTPQVTSIEASLQTQPEDAETLRDFFARHGFKTLLREAETALATQAG
EAAPAPATDTIERQYEAVLTWEQFDAWLKTIEAAELTAFDTETTSLDAMQAQLVGLSFSC
EPGRAAYIPVAHRAPGEVEQLPRDEVLARLKGWLENPDCKKVGQNLKYDAHVLENYGIVL
RGIAHDTLLESYVVESHRSHDMDSLASRHLGVSTIKYEDVCGKGAKQIGFDEVSVELATQ
YAAEDADITLRLHRALYPDVAREATLEFVYGNIEMPTARVLQRMERNGVLVDTARLAAQS
DEIGHKLIALEAEAFTLAGQQFNLNSPKQIGDIFFTQLQLPVVKKTASGAPSTDEEVLQK
LAEDYPLPKVLLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTNYAQAVAITGRLASNDPNL
QNIPVRTTEGRRIREAFVAPPGSQLVSADYSQIELRIMAHISGDESLLRAFANGEDIHRA
TAAEIFAVTPLEVSSEQRRYAKVINFGLIYGMSAFGLAANLGIERDAAKQYIDRYFMRYP
GVARYMDETRKSAKARGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADLI
KLSMIAVQRWLDDSGLQTRQIMQVHDELVLEVPDHELAEVCKRLPELMCGVAKLRVPLVA
EVGVGENWEKAH
NT seq 2739 nt   +upstreamnt  +downstreamnt
atgtcggaacagcaaagtctggaaggtaagacgctcttattggtcgatggttcgagttat
ctttatcgagcctaccacgccctgccggatttgcgcggccccaatggcgaacccacgggc
gcgttgcacggcatcgtcaacatgctgcgccgcatgcgtaaagacgtacatgcagagtat
agcgcttgcgttttcgacgccaagggcaagacgtttcgcgacgattggtatccggaatac
aaggccaaccgtccgtcgatgccggacgatcttcgtctgcagatcgagccgattcacgag
gccgtgcgcgcaatgggctggccgctcctgatgatcgacggcgtggaagccgacgacgtc
atcggcacgctcgccaggcgcgccaccgagttcggcatgcgcgtgatcgtctccaccggc
gacaaggatctggcgcaactggtcaacgaccgcgtgacgctcgtcaacacgatgacgaac
gaaacgctcgacgttgctggcgtgaccgcgaagttcggcgtgccgcccgagcgcatcgtc
gattacctcacgctggtgggcgacacggtcgataacgtgccgggcgtggagaagtgcggc
ccgaagaccgccgtgaagtggctcacgcagtacggcgatctcgacaacctcgtggccaac
gccgccgaagtgaaaggggcggtcggcgagaacctgcgtcgcgcgctcgactggctgcca
atgggccgcaagctcgtgaccgtggcgctcgactgcgatctcacgccgcaggtcacctcg
atcgaggcgagcctccagacccagccggaagacgccgaaaccttgcgcgacttcttcgcg
cgtcacggtttcaagacgctgttgcgcgaggccgagacggcgctcgccacgcaggcgggc
gaggcggcgccggcaccggcgaccgacacgatcgagcgtcaatacgaagcggtgctcaca
tgggagcagttcgacgcgtggctcaagaccatcgaggcggccgagctgaccgcgttcgac
accgaaaccacttcgctcgacgccatgcaggcgcaactcgtcggcctgtcgttctcgtgc
gagccggggcgcgccgcctacattccggtggcgcaccgcgcgccgggcgaagtcgaacaa
ctgccgcgcgacgaagtgctggcacgcctgaagggctggctcgagaatccggattgcaag
aaggtcggtcagaacctcaagtacgacgcccacgtgctggagaactacggtatcgtgctg
cgcggtatcgcccacgacacgctgctcgaatcgtacgtggtcgagtcgcaccgcagtcac
gacatggacagcctggcgtcgcgccatctcggcgtgtccacgatcaagtacgaggacgta
tgcggcaagggcgcgaagcagatcggctttgacgaggtcagcgtcgaacttgccacccag
tacgccgcggaggatgccgacatcacgctgcgcctgcaccgtgcgctctatcccgatgtc
gcgcgcgaagccacgctggagttcgtctacggcaatatcgagatgccgacggcgcgcgtg
ctgcagcgcatggagcgcaatggcgtgctcgtcgacacggcacggctcgccgcgcagagc
gatgaaatcggccacaagctgatcgcgctcgaagcggaagcgtttacgttggcggggcag
cagttcaatctgaattcaccgaagcagatcggtgacattttcttcacgcaactgcaactg
ccggtcgtcaagaagaccgcgagcggtgcgccgtcgaccgatgaagaagtgctccagaag
cttgccgaagactatcccctgccgaaggtgctgctggagtatcgcggcctcgcgaagctc
aagtcgacctacaccgacaaactgcccaagatggtcaatccgtcgacggggcgcgtgcat
acgaattacgcgcaggccgtggcaatcacgggccggctcgcgtcaaacgatcccaatctg
cagaacattccggtgcgcacgaccgagggccgacggattcgcgaggcgttcgtggcgccg
ccgggcagccaactggtgtcggccgactactcgcagatcgaattgcgcatcatggcgcat
atctcgggcgacgaaagcctgctgcgcgctttcgccaatggcgaggacattcaccgcgcg
acggccgccgaaatcttcgcggtcacgccgctggaagtctcgtccgagcagcgccgctat
gccaaggtcatcaatttcggtctgatctacggcatgagcgcgttcggtctggcagcgaac
ctcggcatcgagcgcgacgccgccaagcagtacatcgatcgctatttcatgcgctacccc
ggcgtggcgcggtatatggacgagacgcgcaagagcgccaaggcgcgcggttacgtcgag
acggtgttcggccgccgcctgtggctgcccgacatcaacggcggcaacggtccgcgccgg
caggccgccgagcgcgccgccatcaatgcgccgatgcagggcacggcggccgatctcatc
aagctctcgatgatcgccgtgcagcgctggctggacgatagtggcctgcagacgcgtcag
atcatgcaggtgcacgacgaactggtgctcgaagtgcccgatcacgaactcgccgaagtt
tgcaagcgcttgccggaactgatgtgcggcgtggcgaaattgcgcgtgccgctcgtggcc
gaggtcggtgtgggcgagaactgggaaaaggctcattaa

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