Pseudomonas putida NBRC 14164: PP4_04810
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Entry
PP4_04810 CDS
T02707
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppun
Pseudomonas putida NBRC 14164
Pathway
ppun03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PP4_04810 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppun03021
]
PP4_04810 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppun03400
]
PP4_04810 (rpoC)
Enzymes [BR:
ppun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PP4_04810 (rpoC)
Transcription machinery [BR:
ppun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PP4_04810 (rpoC)
DNA repair and recombination proteins [BR:
ppun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PP4_04810 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BAN52334
LinkDB
All DBs
Position
567164..571363
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGSSTKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIINSATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVIVRSPINCETRFGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKHVVRADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTHVLVENERLAGEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcgggctggcgtcacctgagatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtaatctgcgagaagtgcggcgttgaagttgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgggttctctac
ttcgagagctacgtcgttatcgacccgggcatgaccacccttgaaaagggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggtcgc
ttgcgtgaagagattccgcagaccaactcggaaaccaaaatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtactgccagtactgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctggacaacggccgtcgcggtcgcgccatcaccggctcgaac
aagcgtccgctgaagtccctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacttgctcggtaagcgtgttgactactctggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaagctgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgttctcgctgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgttcgagcctgtg
ctcatcgaaggtaaggccatccagcttcacccgctggtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagctcagctcgaagcg
cgtgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgagggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagctgccctgcacgcgaaaatcaaggtccgtatcaacgagaccgtgaatgaccgtgat
ggcagctcgaccaagaacacccgtatcgtcgacaccaccgtcggccgtgcgctgctgttc
caggttgtgccggcgggcctgccgtacgatgtcgtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgttatcttc
gccgaccagctgatgtacaccggtttcgcgtactccaccatctctggcgtgtccattggt
gtgaacgactttgtcatcccggatgagaaagcgcgcatcatcaacagcgctaccgatgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgcgaaggcaaagaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactccggtgcgcggggttccgctgcccagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgtacttcagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgccttgaagactgcgaactccggttacctgacccgtcgtctg
gtagacgttgcgcaagacctggttgtgaccgagatcgactgcggtaccgaccagggcttg
ctgatgactccgcacattgaaggcggtgacgttgtagagccgttgggtgagcgtgtactg
ggccgtgtcatcgcccgtgacgtgttcaagccaggcaccgaggacgtcatcgttcctgcc
ggtaccctggtagacgaacagtgggtcgagttcatcgagctgaacagcatcgacgaagtt
atcgtgcgttcgccgatcaactgcgaaacccgcttcggtatctgcgccaagtgctacggt
cgtgacctggcgcgtggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccaggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacttcggctgccgacagcgtccaggtgaagaacggcggtatggtacgtctg
cacaacctgaagcatgtcgtgcgcgccgatggcaacctggttgctgtttcgcgttccggt
gagctggccattgccgacgaattcggtcgtgagcgtgagcgttacaagctgccttacggt
gcggtgatttcggtcaaggaaggtgaaaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgtcagacagacgaactgaccggcctgaccaacattgaa
gtactggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccggcaatcaagatg
gtcgacgccaatggcaaggacctgtacctgccgggtaccgacgtaccggcgcagtacttc
ctgccggccaacgccttggtgggtgttgctgacggtgcccagatcggtgttggtgacgtt
attgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccacgc
gtagctgacttgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggtaccatcgcgttcggtaaagagaccaagggcaagcgtcgtctggtcatcactccgacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaggttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgttaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatctcggagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgactcacgtactggtcgagaacgagcgtctcgccggcgaagacaagttcatctcg
aagttcactcgcgtgctgctgggtatcaccaaggcgtcgctgtcgaccgagtcgttcatt
tccgcggcttccttccaggaaactacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtcgtcgtgggtcgtctgatcccggcgggt
actggtctggcctaccacagcgagcgcaagcgtcgccgtgaagccgacaaaccgctgcgt
gtaagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactaa
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