Pseudomonas putida NBRC 14164: PP4_08070
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Entry
PP4_08070 CDS
T02707
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ppun
Pseudomonas putida NBRC 14164
Pathway
ppun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP4_08070 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppun03019
]
PP4_08070 (rhlB)
Enzymes [BR:
ppun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PP4_08070 (rhlB)
Messenger RNA biogenesis [BR:
ppun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PP4_08070 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
DUF7464
Motif
Other DBs
NCBI-ProteinID:
BAN52660
UniProt:
A0ABM7EAB1
LinkDB
All DBs
Position
complement(936193..937662)
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AA seq
489 aa
AA seq
DB search
MLKALKKIFGKGDAAPQAVAPAASVTPPARAPASEARPAAKPAVPRANTAPEAEQPATAT
AMPLADKAAKDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLGF
PYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALI
IAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDF
NQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNL
AKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNNWERVMVFANRKDE
VRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGRITVLVATDVAGRGIHIDGISHV
INFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDSYQLPAIEELLGRKIKCEMPPDEL
LKPVPRKHH
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaaaatattcggcaagggagacgccgcgccacaggccgtcgct
cctgctgccagcgtgacgccgcctgcgcgcgcacccgccagcgaggcccggcccgcagca
aaaccggccgtaccgcgcgccaacaccgcccccgaggctgaacaacccgcaaccgctacc
gctatgccacttgccgacaaagcggccaaggacaaaccgcgtcgcgagcgcaagcccaag
ccgcaggccagcctgtggaagccggaagacttcgtggtcgagccgcaggaaggcaagacc
cgcttccacgacttcaaactgtccaacgagctgatgcacgccatccacgacctgggcttc
ccgtactgcacgccgatccaggcgcaggtgctgggttataccctgcgtggccaggacgcc
atcggccgcgcacagaccggtaccggcaagactgctgcgtttttgatttcgatcatttcc
cagctgcagcagacgccaccgcccaaggaacgctacatgggcgaaccgcgtgcgctgatc
atcgcgcctacccgggagctggtggtgcagattgccaaggacgccgctgcgctgaccaag
tacaccggactgaacgtcatgagctttgtcggcggcatggacttcgacaagcagctgaag
gcccttgaagcacgccactgcgatatcctcgtagccaccccaggccgcctgctggacttc
aaccagcgcggcgaggtgcacctggacatggtcgaggtgatggtgctggacgaagccgac
cgcatgctcgacatgggtttcatcccccaggtgcgccagatcattcgccagacaccacca
aaaagcgagcgccagaccctgctgttctccgccaccttcaccgacgacgtgatgaacctg
gcgaagcaatggaccaccaacccggccatcgtcgagatcgaaccggaaaacgtggccagc
gaaacggtcgagcagcacgtgtatgcggtggctggcagcgacaagtacaagctgctgtac
aacctggtaacccagaacaactgggaacgggtgatggtgtttgccaaccgcaaggatgaa
gtgcggcgcatcgaggaaaaactggtgcgcgacggcatcaatgccgcccagctgtcgggc
gacgtgccgcagcacaagcgcatccgcaccctggaaaacttccgcgaagggcgcatcacc
gtgctggtggccaccgacgtggccgggcgtggcatccatatcgatggcatcagccacgtg
atcaacttcaccctgccggaagacccggacgactacgtgcaccgcattggccgtaccggc
cgggcgggggcaagcggcgtgtcgatcagttttgccggggaggatgactcgtatcagcta
ccagcgatcgaagagctgctggggcgcaagatcaagtgcgaaatgccaccggacgagctg
ttgaagccggtgccgcgcaaacaccactga
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