Pseudomonas putida NBRC 14164: PP4_11890
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Entry
PP4_11890 CDS
T02707
Name
(GenBank) putative RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppun
Pseudomonas putida NBRC 14164
Pathway
ppun02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PP4_11890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppun03021
]
PP4_11890
Transcription machinery [BR:
ppun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PP4_11890
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
PhyR_sigma-like
HTH_23
Sigma70_r4
PhyR_sigma2
AlcCBM31
Motif
Other DBs
NCBI-ProteinID:
BAN53042
UniProt:
A0ABM7EAZ1
LinkDB
All DBs
Position
complement(1367186..1367794)
Genome browser
AA seq
202 aa
AA seq
DB search
MQYSLGAPTIAIISHSHHYALAPDAAVVSIPELNTSLHTLYHSHSRWLLGFLYRRLGSRC
DAADLVQDTFVRILNRPRQFDGARGERSYLATIARGLCVDHWRRQKLEQAWLQQLALQPE
ALQPSPEQRAIIVETLHEVDAMLLRLPSKVRQAFLLAQIDGLAYPDIAAHIGVSERMIKK
YLAQAFLHCAILEAELDGLLVE
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
ttgcagtattctctcggcgcccctactattgcgatcatttctcattcgcaccattatgcg
ctcgcgccggatgccgccgtggtttcgatcccagagctgaacacctcgctccataccctg
taccacagccactcgcgctggttgctcggctttctgtaccgccgcctgggcagccgctgc
gatgccgcggaccttgtgcaggacaccttcgtgcgcatcctcaaccgcccaaggcagttc
gacggtgcacgcggcgagcgctcgtacctggcgaccattgcccgcggcctgtgcgtggac
cactggcgccggcaaaagcttgaacaggcctggttgcagcaattggccttgcagcccgag
gcactgcagccctcccccgaacagcgcgcgatcattgtcgagaccctgcacgaggtggac
gccatgctgctgcgtttgccgagcaaggtgcgccaggcattcctgctggcgcagatcgat
ggcctggcctaccccgatatcgccgcgcacattggcgtgagcgaacgcatgatcaagaaa
tacctggcccaggcgtttctgcattgcgccattcttgaagccgaactcgacggcttgctg
gtggagtga
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