Pseudomonas putida NBRC 14164: PP4_12750
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Entry
PP4_12750 CDS
T02707
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppun
Pseudomonas putida NBRC 14164
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppun03019
]
PP4_12750 (hrpA)
Enzymes [BR:
ppun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PP4_12750 (hrpA)
Messenger RNA biogenesis [BR:
ppun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PP4_12750 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
ResIII
AAA_25
ABC_tran
T2SSE
AAA_30
NACHT
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BAN53128
LinkDB
All DBs
Position
1489931..1493836
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDKLLQNLDHAMIADRHRLRRQLHELRKRPDEAKLAQWVEKVQASCAQVTARQQS
VPTVRYDDNLPIAAKRDEIKKALAENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGGLVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRL
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDNAPII
EVSGRTFPVETWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAHHERSEGKGPGDVLI
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSL
TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEE
DFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPIGRQLARLPVDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRELQLTVNKEPSDYLKMHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGLG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLVKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHYGPIDPVTSRELFIREGLVGGEIQSRAKCLTANKRLLEELDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREAS
EVTAAQYPDSMQVGELRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGARVSDEAWE
ESVKLVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRDAKSEQPVQAK
AFSEVKQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYRDMGRVEALVEDILLASLDSCILEGEQPLPRDGAALAGLAE
RKRGSWAEHAERLARLTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLSNLVYPGFVR
ETPAAWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGKRDE
QLALYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacaaactgctgcaaaacctcgaccacgccatgatcgccgac
cgccatcgtctgcgccggcaactgcacgaactgcgcaagcgccccgacgaggcgaagctg
gcgcagtgggtggaaaaggtccaggcgtcttgcgcccaggtcaccgcgcgccagcagagc
gtgccgaccgtgcgctacgacgacaacctgccgatcgccgccaagcgtgatgaaatcaag
aaggccctggccgaaaaccaggtgctggtgatcgccggcgaaaccgggtcgggcaagacc
acccagctgccgaaaatctgcctggagctgggccgtggcagccatggcctgatcgcccac
acccagccgcgccggatcgccgcgcgcagcgtggcggcgcgggtcgccgaagagctgggc
acgcctctgggcgggctggtcggctaccaggtgcggttcgaagaccagagcgattccaac
accctggtcaagctgatgaccgacggcatcctgctggccgaaacccagcacgaccgcctg
ctggagcgctacgacacaatcattgtcgacgaagcccacgagcgcagcctgaacatcgac
ttcctgctcggctacctgaagaccctgctgcatcgtcggccggacctgaagctgatcatc
acctcggcgaccatcgacctggagcgcttctccaggcacttcgataacgcgccaatcatc
gaggtgtccgggcgcaccttcccggtagaaacctggtaccgcccgctgaccagcgagcag
gacgaggaaggcaaccagatcgaagacgacctcaccgtcgaccaggctatcctcgccacc
ctggatgagctggcgcaccatgagcgcagtgagggcaagggcccgggcgatgtgctgatc
tttttgccgggcgagcgggaaatccgcgatgccgccgagatcctgcgcaaggcgcagctg
cgccacaccgagattttgccgttgtacgcgcgcctgtcgccggccgagcagcagcgcatc
ttccaaccgcacaccgggcgccgcgtggtgctggccaccaacgttgccgaaacctcgctg
accgtgcctggcatccgctacgtgatcgacaccggtaccgcgcgcatcagccgctacagc
taccgcgccaaggtacagcgcctgcccatcgaggcggtgtcccaagccagtgccaaccag
cgtaaaggccgctgcggccgggtcgagcccggcatctgcgtacgcctgtacagcgaagaa
gatttcaacagccggcccgcgttcaccgaccctgagatcctgcgcaccaacctggcggcg
gtgatcctgcagatgctgcacctgcgcctgggcgcgatcgatgccttcccgttcatcgag
ccgccggatggcaaggccatcagcgatggcttcaacctgctgcaagagctgtcggcggtc
aaccgcgagaaccagctgaccccgatcggccgccagctggcgcgcctgccggtggaccca
cggctgggccgcatgctgctagaaggtgcacgcctgggcagcttgcaggaagtgctgatc
gtcaccagtgcgctgtcggtccaggacccgcgcgaacgcccgccggagcgccagcaggcc
gccgaccaggcccacgcacagtggaaggacgtggactccgacttcgccgcgctggtcaac
ctgtggcgtggttttgaagagcagcgccaggcgctgacggccaacccgctgcgcaactgg
tgccgcaagaacttcctgaattacctgcgcctgcgtgaatggcgcgatgcccaccgccag
ctggcactgatctgccgtgagctgcagttgacggtgaacaaggaaccgtccgactacctg
aagatgcacaaggccatcctcagtggcctgctgagccagatcggccagaagaccgaagag
ggcgactaccagggtgctcgccaacggcggttctgggtacacccgtcgtcgggcctgggg
cgcaagcgcccgcagtgggtaatggccgccgaactggtcgagaccaccaagctgtatgcg
cgcatggtggccaagatcgagccggactggatcgagccgctggccggccacctggtcaag
aagaaccacttcgaaccgcactgggagaaaaagcgcgggcaggtggtggcctatgagcag
atcaccttgtacgggctgattctggttggccgccgcccggtgcactacggcccgatcgac
ccggttacttcacgcgagctgtttatccgggaaggcctggtggggggcgaaatccagtcg
cgagccaagtgcctgactgccaacaaacgcctgcttgaggagcttgacgagctggaggcc
aaggcccgccggcgcgacatcctggccgacgaagaaacgctgtacgccttctacgaagcg
cgcctgccggcggaaatacaccagaccgcgaccttcgacagctggtaccgcatgggcagc
cagaaggacgccaacctgctgatcatgcgcgaggaggacgtgctggcccgcgaggccagc
gaggtgaccgcagcgcagtaccccgacagcatgcaagtgggtgagctgcgcctgccgctg
agctaccatttcgagcccggccacccgcgtgacggcgtgactgtgcgggtgccggcaccg
ctgttgccaagcctgcccggtgaacgcctggaatggctggtgccgggcctgcttgaagcc
aagtgcgtggcgctggtgcgcaacttgccaaaggccctgcgcaagaacttcgtgccggtg
ccggacttcgtcaaggcctcgctggcgcgcatgacgttcggccaaggggcgctgccgcag
gccctgggccaggagctgttacgcatgaccggtgcgcgggtgtccgatgaggcctgggaa
gaatcggtcaaactggtcgaaggccacctgcggatgaacatcgaagtggtcgatggccaa
ggcaagttccttggcgaaggccgcgacctggccgagctgaccgcacgctttgccgctgcc
agccaggcagcgctggctgtgccgcgtgatgccaaaagcgaacagccggtacaggccaaa
gccttcagcgaggtgaaacagaccgcccagcagaagattgccggcctgtcgatgaccgtg
tacccggcgctggtcgaagacaacggcaccgtgcgcgaagggcgcttctcgacccaggcc
gaagccgagttccagcaccgtcgcgcgttgcaacggctgttgctgcagcaactggccgag
ccggccaagttcctgcgcggcaagctgccggggctgaccgaactgggcctgctgtaccgt
gacatgggccgggtcgaggcgctggtcgaagacattctgctggccagcctggacagctgc
attctcgagggagaacaaccactgcctcgtgatggcgcggccctggccgggctggctgaa
cgcaagcgcggcagctgggccgagcatgccgagcgcctggcgcggctgacgttggaggtg
ctgaagctctggcatggcctgcagaagcgcttcaagggcaagatcgacctgagccaggcg
gtggcgctgaacgacatcaagcagcagctaagcaacctggtatacccgggctttgtgcgc
gaaacgcccgcggcgtggttcaaggagctgccacgctacctcaaggcggtggaactgcgc
ctggaaaagctgggttcgcaagtgcagaaggaccgggtctggtccggcgagctggccaac
ctgtgggcgcagtacaaggcccgtgccgacaagcacgcccaagagggcaagcgtgatgag
caactggctttgtaccgttggtggctggaggaatatcgggtgtcgttgtttgcccagcag
ttggggaccaaggtgccgatttctgacaagcgactgagcaaacagtggagtcaggtggaa
ggctaa
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