Pseudomonas putida NBRC 14164: PP4_29780
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Entry
PP4_29780 CDS
T02707
Name
(GenBank) hypothetical protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppun
Pseudomonas putida NBRC 14164
Pathway
ppun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PP4_29780
09124 Replication and repair
03420 Nucleotide excision repair
PP4_29780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppun03021
]
PP4_29780
03036 Chromosome and associated proteins [BR:
ppun03036
]
PP4_29780
03400 DNA repair and recombination proteins [BR:
ppun03400
]
PP4_29780
Enzymes [BR:
ppun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PP4_29780
Transcription machinery [BR:
ppun03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PP4_29780
Chromosome and associated proteins [BR:
ppun03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PP4_29780
DNA repair and recombination proteins [BR:
ppun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PP4_29780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
DUF7711
Motif
Other DBs
NCBI-ProteinID:
BAN54831
LinkDB
All DBs
Position
complement(3371341..3373602)
Genome browser
AA seq
753 aa
AA seq
DB search
MSYSVAVRALCEFSAKVGDLDLRFTPSPTAQEGIEGHQRVVARRAAGYESEITLEGQFET
LKVRGRADGYDPGSNRLEEIKTHRGDLARQPANHRQLHWAQAKVYGWLMCQARQLPAIEV
ALVYLDVDSDDQTLFSEHYTAAELRAFFETQCQRFLGWAQFQQRRLAERDQGLQALRFPY
PQFRQGQRQLAETLYKAVSTGRCLMAQASTGIGKTLGTLFPLLKAMVPQQLDKLFFLTAK
TPGRALALDTMSQITDATPQPALRTLELIARDKACEYPDKACHGESCPLAAGFYDRLPAA
REAAAALPLLDRANLREVALAHQVCPYYLGQEMARWVDVLVADYNYYFDAHALLFGLTQL
NQWRVAVLVDEAHNLVERGRSMYSATLDQGQLLALRQSKPPGLVSALDRLNRQWNAIYKE
QRAPYQASESLPDGLLRALQQCIGLIQEQINQTPAQMDPQVLQFFFQALQFSRVAELFDE
HFLFDISQRQGPRKRRLATLCLRNVTPARLLAPRMQAARSVTLFSATLSPRHFYSDLLGM
PADTAWLEVAAPFRAEQLEVRIASQVSTRYQQRHASLAPIVELIAQQYERMPGNYLAFFS
SFEYLQQVAGLLAERHGQIPLWAQEPGMDEAARQGFLDRFVADGKGVGFAVLGGAFGEGV
DLPGTRLIGAFVATLGLPQVNPVNEQFKQRLGQQFGAGFDYAYLYPGVRKVIQAAGRVIR
GDQDRGVLVLIDERFAEPRVQQMFPTWWPAAIL
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
ttgagctacagcgtggcggtgcgtgccttgtgcgagttcagcgccaaggtcggcgacctg
gacctgcgcttcacgccgtcgcccaccgcccaggagggcatcgaagggcaccagcgggtg
gtggcacggcgtgctgcgggctacgagtcggaaatcacccttgaaggccagttcgaaacc
ctcaaggtgcgaggccgcgccgatggttatgaccctggcagcaatcgcctggaagagatc
aagacgcaccgtggcgatctggcgcgtcagccggccaatcaccgccagttgcactgggcc
caggccaaggtctatggctggttgatgtgccaggcacggcaattgccagccatcgaggtg
gcgctggtgtacctggacgtggacagcgatgaccagacgctgttcagtgagcactacacg
gctgctgaattgcgggccttcttcgaaacccagtgccagcgctttctgggctgggcccaa
ttccagcaacggcgtctggccgagcgtgaccaagggcttcaggcgctgcgtttcccctat
ccacagttccgccagggccaacggcagctggccgaaaccttgtacaaggcggtaagtacc
gggcgttgcctgatggcccaggccagcaccggcattggcaagaccctcggtaccttgttc
ccgctgctcaaagccatggtgccgcagcagctggacaagctgttctttctcactgccaag
accccgggcagggcgctggccctcgataccatgagccagatcaccgatgccacgccacaa
cctgccttgcgcaccctggagttgatcgcccgcgacaaggcctgtgagtaccccgacaag
gcctgtcatggtgaatcctgcccactggccgcaggcttctacgaccgtttgccggcagcg
cgtgaggctgcggcagcactgcctttgcttgaccgtgccaacctgcgcgaagtggccttg
gcgcatcaggtttgcccgtattacctggggcaggagatggcgcgctgggtcgacgtgctg
gtcgctgactacaactactacttcgatgcgcatgccttgctgttcggcctcactcagctc
aaccagtggcgcgtggcagtactggtggacgaagcgcataatcttgtcgagcgtgggcgc
agcatgtacagcgccacccttgaccaagggcagctgctggccctgcgtcagagcaaaccg
ccagggctggtcagtgcgctggaccgccttaaccggcagtggaacgccatctataaagaa
cagcgcgcgccttatcaagccagcgagtcgctgccagacggcctgctgcgcgcccttcag
caatgcatcgggctgattcaggagcagatcaaccagacgcctgcgcaaatggacccgcag
gtgttgcagttcttcttccaggccttgcagttcagccgggttgccgagctgttcgatgag
cattttctgttcgacatcagccagcgtcagggcccgcgcaagcgtcggctggctactctg
tgcctgcgcaatgtcaccccggcacgcctgttggccccgcgcatgcaggcggcccgcagc
gtgacactgttttccgccacgttgagcccgcggcatttctacagcgacttgctgggcatg
ccggccgataccgcgtggctggaagtggctgcgccgtttcgcgcagagcagctggaggta
aggattgccagccaggtgtccacccgttaccagcagcgccacgcctccctggcgccgatc
gtcgagctgattgcccaacagtacgagcgcatgccgggcaactacctggcgttcttcagc
agcttcgaatacctgcagcaagtggccggtctgctggccgagcggcatgggcagattccg
ctgtgggcccaggaaccgggaatggacgaggcggcccgccaagggtttcttgaccgcttt
gtcgccgatggcaaaggcgtgggcttcgccgtactgggcggtgcgttcggcgaaggcgtg
gatttaccaggtacccggttgatcggcgcgtttgtcgccaccttgggtttgccgcaggtc
aacccggtcaacgaacagttcaaacagcggctggggcagcagtttggggcgggcttcgat
tacgcctacctgtaccctggagtgcgcaaggtgatccaggcggcgggccgggttatccgt
ggtgaccaggatcgaggcgtgctggtattgatagacgaacgctttgccgaaccccgcgtg
cagcagatgtttccgacatggtggccggcagccatcctctag
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integrated database retrieval system
