Pseudomonas putida NBRC 14164: PP4_38830
Help
Entry
PP4_38830 CDS
T02707
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppun
Pseudomonas putida NBRC 14164
Pathway
ppun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP4_38830 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppun03019
]
PP4_38830 (rne)
03009 Ribosome biogenesis [BR:
ppun03009
]
PP4_38830 (rne)
Enzymes [BR:
ppun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PP4_38830 (rne)
Messenger RNA biogenesis [BR:
ppun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PP4_38830 (rne)
Ribosome biogenesis [BR:
ppun03009
]
Prokaryotic type
rRNA processing factors
PP4_38830 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAN55736
UniProt:
A0ABN5URL9
LinkDB
All DBs
Position
4421530..4424760
Genome browser
AA seq
1076 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIR
QVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQ
RLRDDNPEVLNNQSSYEIATTEAEEAPQQTATRTLVRQEAAVKTAPARTNAPVPVAEEPQ
AVAPAAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAAPVVAEKPAAERSPRNEERRNGR
QQSRNRNGRRDEERKPREERAERAPREERQPREERAPREERAPREERAPREERAPRQPRE
DRRSNRGEERVRELREPLDATPPAEREERQPREERVAREERAPREERAPREERAPREERA
PREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRVAEEAAEQAAELA
EEQLPNEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGELIDGGEEEEGSEEQP
QQHQATELGAELAAGLAVTAAVASSNISADAEAQANQQAELATAEIAAAAETDNSHAAQP
VEKAEKVEPVEAVAKAEDVAVAPVVEQPVSEPVVVAEVTAEPVVEVAPQHLVEEAPAAEP
VIVAEAPVETPAVEAGEIEKAPAVVETAPVAEQPAPVVEAQPEVVAEPAPVVVEPAPVEA
EAATVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAAATEEPALEAADEHKPHHS
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgtagccctggtggacggccaacgc
ctctacgacctggacatcgagtccggcgcacgtgagcagaaaaaggccaacatctacaaa
ggcaagatcacccgcatcgaacccagcctcgaagccgccttcgtcgacttcggttccgaa
cgtcacggcttcctgccgctgaaagaaatctcccgcgaatacttcaagaaagcccccgaa
ggccgggtgaacatcaaggaagtgctcagcgaaggccaggaagtcatcgtccaggtcgag
aaggaagagcgcggcaacaaaggcgccgccctcaccaccttcatcagcctggctggccgc
tacctggtgctgatgcccaacaacccgcgtgctggcggcatctcccgccgcatcgaaggc
gaagagcgcaacgaactgcgcgaagccctgaacggcctgaccgtgccgggcgacatgggc
ctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcagctgtggaccgccatcaaggaagcatccctggaccgcgccgcgccattc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggtgaagtgctgatcgacagcatcgacgcccaggaagaggccctgaccttcatccgc
caggtgatgccgcagtacgccagcaaggtgaaactgtacgaagacagcgtaccgctgttc
aaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtggtcgacctgccg
tccggtggttcgatcgtgatcgacccgaccgaagccctggtgtctatcgacatcaactcg
gcgcgcgccaccaaaggcagcgatatcgaagaaaccgccctgcagaccaacctggaagcg
gcggaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtgatcgac
ttcatcgacatgaccccggcgaaaaaccagcgcgccgttgaagaacgcgtgcgcgaatgc
ctggaagcggaccgtgcccgcgtgcaggttggccgcatctcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgcccatcgctgggcgaaagcagcggcatcgtctgcccacgc
tgctccggcaccggcatcatccgtgacgtggagtcgctgtcgctggccatcctgcgcctg
atcgaagaagaagccctgaaggaccgcactgccgaagtccgtgcacaagtgccaatcccg
gtggccgcgttcctgctcaacgagaagcgcaactcgatcaccaagatcgaactgcgcacc
cgtgcgcgcatcatcatcctgccgaacgatcacctggaaactccgcacttcgaagtccag
cgcctgcgcgacgacaacccggaagtgctgaacaaccagtccagctacgagatcgccacc
accgaagccgaagaggcaccgcagcagaccgccacccgcaccctggttcgccaggaagca
gcggtcaagaccgccccggcccgcaccaacgcgccggtaccggttgctgaagagcctcag
gctgttgccccggccgccccggccccgagcgccccggagccaagcctgttcaaaggcctg
gtgaagtcgctggtcagcctgttcgccggcaaggacgaacctgcagctgctgcacctgtc
gtcgccgagaaaccggccgccgagcgcagcccgcgcaacgaggagcgccgcaacggccgt
caacagagccgcaaccgcaacggccgccgcgacgaagagcgcaagccgcgtgaagagcgt
gccgagcgcgccccgcgcgaagagcgccagccacgcgaggagcgtgcaccgcgcgaagag
cgtgcaccacgcgaagaacgcgccccacgcgaagagcgtgcaccacgccagccacgcgaa
gaccgccgcagcaaccgcggcgaagagcgcgtgcgcgaactgcgtgagccgctggatgcc
accccgccagccgaacgcgaagagcgccagccacgtgaagagcgtgtagcccgtgaagaa
cgcgccccacgtgaagagcgtgcacctcgcgaagaacgtgctccgcgtgaagagcgcgca
cctcgcgaagaacgtgctccgcgtgaagagcgtgctcctcgcgaagaacgtgctccgcgt
gaagagcgcgcacctcgcgaagaacgtgcgccacgcgaagaacgcgccccgcgcccacca
cgcgaagagcgccagccacgcgtagccgaagaagcggccgagcaggctgccgaactggcc
gaagagcaactgccgaacgaagagctgctgcaagacgaacaggaaggcaccgatggcgag
cgtccgcgccgccgctcccgtggccagcgtcgtcgcagcaaccgtcgtgagcgccagcgc
aacgccaatggcgagctgatcgacggtggcgaagaggaagaaggcagcgaagagcagcca
caacagcaccaggccaccgagctgggtgccgaactggccgccggcctggcagtgactgcc
gctgttgccagcagcaacatcagcgccgacgccgaagcccaggccaaccagcaggccgaa
ctggccaccgccgaaatcgctgccgcagcagagaccgacaacagccacgccgctcagccg
gtcgagaaggctgaaaaggtcgagccggttgaagccgtcgccaaggctgaagacgttgcc
gtagccccagtggtggagcagcctgtcagcgagccggttgtcgtggccgaggtcactgcc
gagccggtagtcgaagtcgctccgcaacacctggttgaagaagcgcctgctgccgaaccg
gtaatcgtcgccgaagcccctgttgaaacgcctgctgtcgaagcgggcgaaatcgaaaaa
gctccggccgtggttgaaaccgctccggttgccgagcagcctgcaccggttgtcgaagcc
cagccagaagtagtcgcagagcctgcacctgtggtcgtcgagcctgccccggtagaggca
gaagctgccaccgtcatgctggccaacggccgtgcgccgaacgacccgcgtgaagtgcgc
cgccgcaagcgtgaggccgaggccgccgccaaagccgcgcaggaagctgctgcagcgacc
gaggagccagccctggaagccgccgatgagcacaagcctcatcacagttga
DBGET
integrated database retrieval system
