Pseudomonas putida NBRC 14164: PP4_52890
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Entry
PP4_52890 CDS
T02707
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppun
Pseudomonas putida NBRC 14164
Pathway
ppun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP4_52890 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppun03021
]
PP4_52890 (rho)
03019 Messenger RNA biogenesis [BR:
ppun03019
]
PP4_52890 (rho)
Transcription machinery [BR:
ppun03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PP4_52890 (rho)
Messenger RNA biogenesis [BR:
ppun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PP4_52890 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
BAN57142
UniProt:
A0ABM7EMP3
LinkDB
All DBs
Position
complement(5983305..5984564)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatcttttggaaatggccgaacag
atgggcatcgagaacatggcccgttcgcgcaaacaggacgtgatcttcgccctgctgaag
aagcacgcgaagagcggcgaagagatttcgggtgacggcgtgctggagattctccaggat
ggtttcggtttcctgcgctcggctgatgcgtcctacctggccggcccggacgatatctac
gtctcgcccagccagatccgccgtttcaacctgcgtaccggcgacaccatcgtcggcaag
atccgcccgccgaaggaaggggagcgttacttcgccctgctgaaggttgataccatcaac
ttcgaccgtccggaaaacgcgaagaacaagatcctgttcgaaaacctgacgccgctgttc
ccgaacaagcgcctgaagatggaagccggtaacggctccaccgaagacctgaccggtcgc
gtcatcgacctgtgcgccccgatcggcaaaggccagcgtggcctgatcgtcgccccgcca
aaagcaggcaagaccatcatgcttcagaacatcgcggccaacatcacccgtaacaatccc
gagtgccacttgatcgtgctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcttccaccttcgacgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctggactccatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctgaccggtggtgtcgacgcccacgccctggagaagccgaagcgcttc
ttcggcgccgcgcgtaacatcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gtcgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggcaccggcaac
atggagctgccgctggaccgccgcatcgccgagaagcgcgtgttcccggccatcaacatc
aaccgttccggtacccgccgcgaagagctgctgactgccgacgacgaactgcagcgcatg
tggattttgcgcaagctgctgcacccgatggacgaaatcgctgccatcgagttcctggtc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtcgatgaagcgcaagtaa
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