Pogoniulus pusillus (red-fronted tinkerbird): 135173649
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Entry
135173649 CDS
T10504
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135173649 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135173649 (MTREX)
03041 Spliceosome [BR:
ppus03041
]
135173649 (MTREX)
03009 Ribosome biogenesis [BR:
ppus03009
]
135173649 (MTREX)
03016 Transfer RNA biogenesis [BR:
ppus03016
]
135173649 (MTREX)
Enzymes [BR:
ppus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135173649 (MTREX)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135173649 (MTREX)
Spliceosome [BR:
ppus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135173649 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
135173649 (MTREX)
Ribosome biogenesis [BR:
ppus03009
]
Eukaryotic type
Pre-60S particles
Helicases
135173649 (MTREX)
Transfer RNA biogenesis [BR:
ppus03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135173649 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
135173649
NCBI-ProteinID:
XP_063996778
LinkDB
All DBs
Position
Z:complement(203464..270643)
Genome browser
AA seq
1028 aa
AA seq
DB search
MADAFGDELFDVFEGNSGTKKTKAGTTEGSKRPGKRLEEKSSVDAIGKSKREVEVNSAED
AVLGKKPKLEDVSDDVNLADLMPRVKVQAVDTVEGCTHEVALPADEDFTGLKPRTGKAAK
EYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKAL
SNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEI
HYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPT
PLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNV
FKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDE
DKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPAR
TVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKG
SADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNLEGQYNK
IAIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVV
VNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPGERGEMQVVPVLVH
LLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKVI
QKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIRAAKRELKKARTVLQMDELKCR
KRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVF
QENSSEMPKLTEQLAGPLRQMQECAKRIARVSAEAKLEIDEENYLNSFRPNLMDVVHTWA
NGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDI
VFAASLYL
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgagcttttcgacgtgttcgaggggaactccggcactaag
aagactaaagcaggcaccaccgaaggctccaagagaccgggaaagcgattggaggagaag
tcttcggtagatgcaatagggaagtccaaaagagaagttgaggtcaatagtgctgaagat
gctgttttgggcaagaagccaaaattggaagatgtatcagatgatgttaatttggcagac
ctcatgcctcgagtaaaggtgcaagctgtggacactgttgaaggctgtacacatgaggtt
gctcttccagcagatgaggacttcacaggtctgaagccaagaactggaaaagctgcaaag
gaatatccatttattcttgatgccttccagagagaagctattctttgtgtagataataac
cagtctgtgttagtgtcagctcatacatcagctggaaaaactgtttgtgcagagtatgca
attgctctggctttgcgggagaagcaacgtgtgatatttacaagtccaattaaagctttg
agtaatcagaagtatcgtgaaatgtatgaagaatttcaggatgttggtttgatgactggg
gatgtcaccattaatcctacagcttcctgtctagtcatgacaactgagattttgagaagt
atgctctacagaggttctgaagttatgcgagaagttgcatgggttatttttgatgaaatc
cactacatgagagactcagaacgtggcgtggtatgggaagagacaattattttgctacct
gacaacgttcattatgtgttcctttctgccactattccaaacgctcgtcagtttgctgag
tggatctgccatcttcacaaacagccttgccatgtgatttacactgactatcgacccact
ccactgcagcattacatattcccagcaggaggagacggactccatctggttgttgatgaa
aacggagatttcagggaagataattttaatacagcaatgcaagtgcttagagatgcagga
gacttggctaaaggagatcagaaaggcaggaaaggaggaacaaaaggtccttcaaatgtt
tttaagattgtgaagatgatcatggaaaggaatttccaacctgtgattattttcagcttc
agtaagaaagattgtgaggcctatgcacttcagatgacaaagttagatttcaatacagat
gaagaaaaaaagatggtcgaagaagtgttcaacaatgcaattgattgtctgtcagatgaa
gacaaaaagcttcctcaggttgagcatgtgcttcctcttctgaagcgaggaattggaatc
catcatggtggtctgctccctatcttaaaagaaaccatagaaattcttttctctgagggc
ctaataaaggccttatttgcaacagagacttttgctatgggaattaatatgccagccagg
actgtactattcacaagtgccagcaaatttgatggaaaagatttccgatggatatcctca
ggtgaatacattcaaatgtcaggtcgtgcagggcgccgaggtatggatgacagagggata
gtgattcttatggtggatgaaaaaatgagtccaacaattggcaagcagcttttgaagggt
tcagctgatcctttaaacagtgcattccacctaacatataacatggtcttgaacttgctt
cgagtagaagaaattaaccctgaatacatgttagagaaatccttctatcaattccagcat
tacagaactattccagaaatagtagagcgagtcaataatttggagggacagtacaacaaa
atagcaattcctaatgaagaaaatgtagtcatatactacaaaattcgtcagcagcttgca
aaactgggtaaagagattgaagagtatattcacaaaccaaaatattgcttgcctttttta
cagccaggaagactggtgaaggtgaagaatgaaggtgatgactttggatggggagtggtt
gttaatttctctaagaaatcaaatgtaaagccaaattctggagagttggacccactatat
gtagttgaagtgctgctgcactgcagcaaagagagtctgaaaaattctgctactgaggct
gcaaagccagccagacctggtgagagaggagagatgcaggtggttcctgttttggtacat
cttctatcagccatcagcagtgttcgcctttacatacctaaagacctgaggcctattgac
aataggcaaagtgtgttaaaatccatacaagaagtacagaaacgatttcctgatggagta
cccttactagaccctattgatgacatgggcatcaaagatcaaggactcaaaaaagtaatc
caaaaagtagaggcatttgagcataggatgtattcacatcctcttcacaatgaccccaac
ttggaaactgtgtacaaactctgtgaaaaaaaagcacagattgctatggatattagagca
gcaaagcgagagctaaaaaaagccagaactgtcttacaaatggatgaactcaaatgccgc
aagcgtgttttgagaagactggggtttgccacgtcctcagatgttattgagatgaaggga
agagttgcttgtgaaatcagcagtgctgatgaactactcctgacagaaatgatgttcaat
ggtctcttcaatgacttatccgcagaacaggcaactgctcttctaagctgttttgtattt
caagagaactccagtgaaatgccaaaattgacagagcagttggcaggaccactccggcag
atgcaggagtgcgcaaaaagaatcgccagggtgtctgcagaagcaaaactggaaatcgat
gaagaaaattatttaaattctttcagacccaacctgatggatgttgtgcatacatgggca
aatggagccaactttgctcacatctgcaaaatgactgatgtctttgaagggagcataatt
cgttgcatgagaaggctggaagagttgcttcggcagatgtgccaggctgccaaagccatt
ggaaacacagagctggaaaataaatttgcagaggggattactaagatcaagagagatatt
gtgtttgctgcaagcctttatctgtaa
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integrated database retrieval system
