Pogoniulus pusillus (red-fronted tinkerbird): 135173714
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Entry
135173714 CDS
T10504
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppus03041
]
135173714 (YTHDC2)
Enzymes [BR:
ppus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135173714 (YTHDC2)
Spliceosome [BR:
ppus03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135173714 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
nSTAND3
Ank
ATPase
AAA_22
Ank_4
PhoH
AAA_23
AAA_7
AAA_16
SRP54
AAA_29
Motif
Other DBs
NCBI-GeneID:
135173714
NCBI-ProteinID:
XP_063996926
LinkDB
All DBs
Position
Z:92374515..92425932
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AA seq
1431 aa
AA seq
DB search
MSRPSSMYPRQPGGDSGTPVSAASSGRAAGRGRGKGLKDVRVDEEVEIAVNLALERFRYG
EEKEMEFPSSFTSTERAFVHRLCQSLGLISKSKGKGTSRYLTVRKKDESELTCAVMTCCL
APSSKNTLWSFIQRFPVTSKDRTELLPRLERGNTCAVEAESREVSKISGRLNNGIPQVPV
KRGESEFDSFRQSLPVFEKQEEIIQVIKDNKVVLIVGETGSGKTTQIPQFLLDDCYKNGT
PCRIFCTQPRRLAAIAVAERVAAERREKIGQTVGYQIRLESRVSPKTLLTFCTNGILLRT
LMAGDGTLSTVTHIIVDEVHERDRFSDFLLIKLRDVLQNQINLKLIISSAALDADLFMRY
FGNCPLIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYQKEKQQEEKQQSSLSEWYSVQE
NGSKLVSRRQKSVPGATDECNLLDDGGDTVFNQLTEKDANCLEPWLIKEMDSCLSDIWLH
KDTDSFAQVFHFILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGANIHCKSSN
GWMALDWAKHFGQTEIVDLLESYSASAEFGNLDESSLVQTSGSGLSMEDRELLKAYHHSF
DDEKVDLDLVMHLLYNICQSYDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVF
MLHSNMQTLDQKKVLKSPPSGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDALSC
VTMLKMVWISKASAIQRKGRAGRCQAGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLH
TKLLAPVNCPIVDFLMKAPDPPPALIVRNAVQMLKTIDAMDPWEDLTELGYHLTELPVEP
HLGKMVLCGVVLKCLDPILTIACTLAYRDPFILPALASQKRAAMLCRKRFTAGTFSDHMA
LLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGADIK
DVNTNSENWAVVKAALVAGMYPNLVHVDRENLMLTGPKEKKIRFHPTSVLSQPQYKKIPP
ANGQAAAIQALPTDWLIYDEMMRSHRIANIRCCSVVTPVTVSIFCGPARLPSNALQEPSC
LRGDEVSNDNSDSEMEDQTTANLALLKLDEWLHLKLDPEAAGLLFQLRQKWHSLFLRRMR
APSKPWSQVDETTVRAIIAVLTSEEQSTGLQQPSGIGQRPRPMASEELPLAAPTWRSINS
RKSSAETEFSDSFNAEKVLVKCTPPTIHQPKRYKEKNILRSKRTSDDRSDQSSVKSTDSS
SYPSPCASPSSSISGKGSKSPMRRPYTPVRYFIMKSSNLQNIDISQQKGVWSTTPSNERK
LNRAFWASSMVYLIFSVQGSGHFQGFARMASEIGSEKSQDWGSAGFGGIFKVEWIRKESI
PFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEHLLQLWDCIPLAGKHLTD
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccagtagcatgtacccgcggcagccaggtggggattcaggtacccctgtc
tcggccgcctcatccggtcgcgcggcgggccgtggccgaggcaagggtctgaaggatgtc
cgcgtcgacgaggaggtggagatcgcggtgaacctcgctctggagcggttccggtatgga
gaggagaaagaaatggaatttccatcttctttcactagtactgaaagagcatttgttcac
cgcctgtgtcagtctcttggactgatatctaaaagtaaaggaaaaggaacaagtcggtat
ctgacagtaaggaagaaagatgaatcagagctaacatgcgcagtaatgacttgttgcttg
gctcccagttcaaaaaatactctttggagtttcattcagagatttcctgtcacaagtaaa
gaccgaacagaacttctaccaaggctggagcgaggaaatacatgtgctgttgaagctgaa
agcagagaagtaagcaagataagcggacggcttaacaacggtatcccccaggttccagtg
aaaagaggggaatcagagtttgattccttcaggcaatcactgccagtttttgaaaaacag
gaagaaatcatccaagtaataaaggacaataaagttgttttgattgtaggagagactgga
tcaggaaaaactactcagatccctcagttccttcttgatgactgctacaaaaatggaact
ccctgtcgcatattttgcactcagccaagacgtttggcagctattgctgtggctgaaaga
gtggcagcagaaagaagagaaaagattggccagacagttggttatcagattcgactagaa
agcagagtttctccaaagacactgttgacgttctgcactaatggcatactgcttcgcaca
ctaatggcgggagatggcactctatcaactgtgacacacattattgtggatgaagtacat
gagagggatagattcagtgacttcttgttaataaaactgagagatgtgttgcagaaccag
ataaatttaaaactaattatttctagtgctgctctagatgcagatctcttcatgagatat
tttggaaattgcccactaatacacatacaaggaagaccttttgaagttaaagagatgttt
ttggaggacattttacgaagcactgggtatacaaacaaagagatggtgaagtatcaaaaa
gagaagcagcaagaagaaaaacagcaaagcagtcttagtgagtggtattctgttcaagaa
aatggtagcaaacttgtatctcggagacaaaaatctgtcccaggtgcaactgatgagtgt
aatctgttggatgatggtggtgacacagtatttaatcaactgactgaaaaagatgcaaat
tgccttgaaccatggctaataaaagaaatggattcttgtctttctgacatttggttgcat
aaagatactgattccttcgctcaggtgttccatttcattttaacagaaaatgtcagtgtc
gattacaggcacagtgaaaccagtgcaactgcattaatgattgcttcagggagaggcttt
ctgagtcaagtagaacaactgatcagtatgggagcaaatattcactgcaaatcatccaat
ggctggatggctttggactgggctaagcactttggacagacagagattgttgacctgttg
gagtcctacagtgcttcagcagaatttggaaatctggatgaaagttccctggtccaaaca
agtggtagtggccttagtatggaggacagagaactcttgaaagcttatcatcacagcttc
gatgatgaaaaagtggatctggacctggttatgcacttgctttataatatctgtcagagt
tatgatgctggagcaattttaatatttcttcctggatatgatgagatagttagcttgaga
gaccgtattctttttgatgacaaaagatttgctgataacgctcacagataccaagttttc
atgcttcattcaaatatgcagactttggatcagaagaaggtgcttaaaagtccaccttct
ggcatccgcaaaataattctttctactaatattgcagaaaccagcataacagtcaatgat
gttgtatttgttattgactcaggcaagatgaaagagaagtcttttgatgcactgagttgt
gttacaatgctaaaaatggtgtggatttcaaaagcaagtgctatccagagaaaaggcagg
gctgggcgctgtcaggctggaatatgttttcgtctcttcagcaggctccgatttcagaat
atgttggaatttcagactccagaacttctaagaatgccacttcaggagctttgtttacac
acaaaacttctggctccagttaattgtccaattgttgactttcttatgaaagctcctgat
cctccaccagctttaattgtgagaaatgctgtgcaaatgcttaagaccatagatgccatg
gacccttgggaagatctcactgagcttggttatcacctcactgaattaccagtagagcca
caccttggtaaaatggtcttgtgtggtgttgttttgaagtgcttggatcctattctcact
attgcttgcactcttgcgtatcgagacccttttatcctacctgcgttggcctctcaaaag
cgtgcagccatgctgtgtagaaaacgttttactgcaggaacgtttagtgaccatatggca
cttctcagggctttccaggcatggcagaaggcacgcagtgatggctgggaaagagccttc
tgtgaaaagaactttctgtctcaagccacaatggaaatcatcataggaatgagaacacag
ttgcttggccagcttagagcctcaggttttgttagagccagaggaggagctgacattaaa
gatgttaatactaactctgaaaactgggctgtagttaaagctgccttagtggctgggatg
taccccaatctagtgcatgtagatagagaaaacttgatgttgactggaccgaaggagaaa
aaaatacgatttcatcctacctctgtgcttagtcaacctcagtataagaagattccccca
gcaaatgggcaagctgcagccattcaagcactccctacagactggcttatatacgatgaa
atgatgagatctcacagaatagcaaatatcagatgctgttctgttgtaacacctgtcact
gtgtcaatcttctgtggaccagctagattaccaagtaatgctttgcaggaaccttcatgc
ctccgaggggatgaggtatctaatgataacagtgatagtgagatggaggaccaaacaact
gctaatttggccctgctgaagctagacgaatggctccatctcaaactagaccctgaagct
gctggtttgctgtttcaactcagacagaagtggcatagcttatttctgcgtcgtatgcga
gctccttctaaaccatggtctcaagttgatgaaacaactgtacgagcaattatagctgtt
ttaactagtgaagaacagtctacaggtttgcagcagccttcaggaattggtcagagacca
agacctatggcttctgaagaacttcctttagcagcacctacatggaggtcaatcaacagt
agaaaaagctcagcagaaactgaattctctgactcctttaatgctgaaaaagttttagtg
aaatgtacacctcccacaattcaccagccaaagagatacaaagaaaaaaacattttgcgc
tccaaacgaacttcagatgacaggtcagatcaatcatcagtgaagtctacggacagcagt
agctatcctagcccctgtgctagtccttcttcttcaatatctggaaagggttctaaatct
cctatgcgaagaccatatacgccagttcgatacttcataatgaaaagtagcaatttgcaa
aacattgacatttctcaacagaagggtgtatggtctactacaccgagtaacgaacgaaaa
ctaaatagagccttttgggcaagcagtatggtttacttaatattttccgttcagggatct
ggacactttcagggttttgctagaatggcttcagagataggttctgagaaaagtcaagac
tggggctctgctggttttggaggtatatttaaggtggagtggatccgaaaagaaagcatt
ccttttcagtttgctcaccacttgctgaacccttggaatgacaataagaaagtacaaata
agcagagatggacaggagctggaaccacaggttggagagcatttgttacagctttgggac
tgtattccattggcaggaaagcacttaactgattga
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integrated database retrieval system
