Pogoniulus pusillus (red-fronted tinkerbird): 135173986
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Entry
135173986 CDS
T10504
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03013
Nucleocytoplasmic transport
ppus03015
mRNA surveillance pathway
ppus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135173986
09122 Translation
03013 Nucleocytoplasmic transport
135173986
03015 mRNA surveillance pathway
135173986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135173986
03041 Spliceosome [BR:
ppus03041
]
135173986
Enzymes [BR:
ppus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135173986
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135173986
Spliceosome [BR:
ppus03041
]
Complex C
Other components
EJC/TREX
135173986
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135173986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
135173986
NCBI-ProteinID:
XP_063997286
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAGGTEGAEVPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLGRDIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtcgacaacgaactgttggactatgaggacgatgaggtggagaac
gcggggggcacggagggggcagaggtgccccccaagaaggacgtgaagggctcctacgtc
tccatccacagctcaggcttcagagacttcctgctcaagcctgagctgctcagggccatt
gtggactgcggcttcgagcacccctctgaagtgcagcacgagtgcatcccccaggccatc
ctgggcatggatgttctgtgccaggccaagtctggcatgggcaagactgcagtgtttgtg
ctggcaacgctgcagcagctggagcctgtcacgggccaggtgtcggtgctggtgatgtgc
cacacgcgggagctggcgttccagatcagcaaggagtacgagaggttctccaagtacatg
cccagcgtcaaggtggcagtgttttttgggggcctgtccatcaagaaggacgaggaggtg
ctgaagaagaactgcccccacattgtggtgggcacccccgggcgcatcctggccctggca
cgcaacaagagcctcaacttgaagcacatcaaacatttcatcctggacgagtgtgacaag
atgctggagcagctggacatgcgccgggacgtgcaggagatcttccggctgacgccgcac
gagaagcaggtgatgatgttcagcgccaccctgggcagggacattcgtcctgtctgcagg
aagttcatgcaggaccccatggagatcttcgtggacgacgagaccaagctgacgctgcac
ggcctgcagcagtactatgtgaagctgaaggacaacgagaagaacaggaagctcttcgac
ctgctcgacgtgctcgagttcaaccaggtggtgatcttcgtcaagtcggtgcagcgctgc
atagccctggcacagctgctggtggagcagaacttccctgccattgccatccacaggggc
atgccccaggaggagaggctctcccggtaccagcagttcaaggacttccagcggcgcatc
ctggtggccaccaacctgttcgggcggggcatggacatcgagagggtgaacattgccttc
aactacgacatgcccgaggactccgacacctacctgcacagggtggcacgggccgggcgc
tttggcaccaagggcttggccatcaccttcgtgtcggacgagaacgacgccaagatcctg
aacgatgtccaggaccgcttcgaggtgaacatcagcgagctgcccgacgagatcgacatc
tcctcctacattgagcaaacccgataa
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