Pogoniulus pusillus (red-fronted tinkerbird): 135174671
Help
Entry
135174671 CDS
T10504
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03018
RNA degradation
ppus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135174671 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
135174671 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135174671 (LSM8)
03041 Spliceosome [BR:
ppus03041
]
135174671 (LSM8)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135174671 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
135174671 (LSM8)
Spliceosome [BR:
ppus03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
135174671 (LSM8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
Motif
Other DBs
NCBI-GeneID:
135174671
NCBI-ProteinID:
XP_063998135
LinkDB
All DBs
Position
4:complement(6108803..6114019)
Genome browser
AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacctcggctttggagaattacatcaaccgtactgtcgcagtaattacttctgatgga
agaatgattgtgggaaccctcaaaggttttgatcagaccattaacttgattttggatgaa
agccatgaacgagtgttcagttcttcacaaggagttgaacaagtagtgctgggattatac
attgtaagaggtgataatgttgctgtcattggtgagattgacgaagagacagattcagct
cttgacttggggaatatccgagcagaacctttgaattcagttgtgcactga
DBGET
integrated database retrieval system
