Pogoniulus pusillus (red-fronted tinkerbird): 135176896
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Entry
135176896 CDS
T10504
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus04140
Autophagy - animal
ppus04142
Lysosome biogenesis
ppus04148
Efferocytosis
ppus05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
135176896 (VPS39)
04140 Autophagy - animal
135176896 (VPS39)
04148 Efferocytosis
135176896 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
135176896 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppus04131
]
135176896 (VPS39)
Membrane trafficking [BR:
ppus04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
135176896 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
SAM_CEP-1_C
LIF1_N
DUF4145
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
135176896
NCBI-ProteinID:
XP_064002409
LinkDB
All DBs
Position
1:complement(28913850..28941285)
Genome browser
AA seq
884 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDIGEVMSSESVCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTC
DLQQSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFK
RDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALN
WTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHF
VWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDNEKRQQIHHIKNLFAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIP
YLEHIIHVWEETGADFHNCLIQLYCEKVQGLMKEYLNSFPADKTPVPAGEEGGDLGAYRK
KLLLFLEKSSWYEPGRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENY
CHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgttgcagatcgactgc
ctggcggcctgggaggaatggctccttgttggtaccaaacaagggcatcttctgctttac
aggatcaagaaggacataggagaggttatgtcatcagaaagtgtctgttgcaataggttt
gaagtgacgctagagaaatccaacaagaacttctcaaaaaagattcagcagattcatgtt
gtttctcagtttaaaattctggtcagtctattagaaaataacatttatgtccatgactta
ctgacgtttcaacaaatcaccacggtttccaaggcaaaaggggcatctctcttcacttgt
gatcttcagcagtcagatacaggagaagaggtgctgagaatgtgcgtggcagtgcggaag
aagctgcaactttatttttggaaggacagagagttccatgagttgcagggggacttcagt
gtacctgatgtacccaagtctatggcctggtgtgaaaactccatctgtgtcggcttcaag
agagattattacctgataagggtggatggaaaaggatccatcaaagaactgtttcccaca
gggaagcagctggaaccattggtagctcctgtagcagatgggaaagttgcagttggccaa
gacgatctaacagttgtgctcaatgaagaaggagtttgtactcagaaatgtgccttgaat
tggacagatattccgatagccatggaacaccagcctccctacatcattgctgttctgccg
agatacgtggagatccgcacctttgaacctcggctgctggtgcagagtattgagctgcag
agaccacgcttcatcacttctggaggcacaaatattatttatgtagcaagcaatcacttt
gtttggcggctcattccagtgtccatagccacacagatccagcagcttctgcaggacaag
cagtttgagttggctttgcagttggcagaaatgaaggatgattcagataacgagaagcga
caacagattcaccacataaagaacctttttgccttcaacctcttctgccagaagcgcttt
gacgaatctatgcaagtttttgccaaacttggtacagatcccactcatgtgatgggtctg
tatcctgacctcctgcccacagattacaggaaacagctacagtatcccaaccccctacca
gggctctctggggcagagctggaaaaggcacatttagctctgatagactacttaactcaa
aaaagaagtcagctggtgaagaagctaaatgattctgaccatcagtccagtacctcaccc
cttatggaaggaacacccacgatcaagtccaaaaagaagctgctacaaatcattgatacc
accctattgaagtgctacctccatacaaatgtagcactggtagcaccattgctacgactg
gagaacaatcactgccatattgaggagagtgagcatgtgctgaagaaggcgcacaaatat
agtgaactgataatactctatgagaagaaaggtctgcatgagaaagcattacaggtacta
gtggatcagtctaagaaagccaattcacctttgaagggtcatgagaggacagtgcaatat
ctgcagcacttgggcacagagaacttgcacttggtattttcctactctgtctgggtgcta
agagattttcctgaagatggactgaagatatttacagaagacctccctgaagtggaagct
ttgccacgagacaaagtgctcagtttcttgatagaaaattttaaaagcttgactattcct
tatctggagcacatcattcatgtctgggaagaaaccggtgcagacttccacaactgtctg
atccagctgtactgtgagaaagtgcagggcttaatgaaagagtatctcaattccttccct
gcagataaaactccagtgcctgcaggggaggaagggggagaccttggggcttaccggaag
aagcttttactttttctggagaagtctagctggtatgaacctggtcgactaattagtgac
ttcccctttgatggtcttctagaagaacgtgctctgctcttgggtcgtatggggaaacat
gagcaagctctgtttatttatgttcatattttgaaggacaccaacatggctgaaaactac
tgccataaacattatgacagaaacaaagatggtaacaaagatgtctatctgtctctgctc
cggatgtatctctccccacccagtgttcattgcctgggaccaatcaagatggaagtgctg
gagcctcaagccaatctgcaggctgctctgcaggttttggaactacatcacagcaaactg
gataccaccaaggcaataaacctactcccagcaaatacacagatcagtgagattcgaatc
tttttagagaaagtccttgaagaaaatgctcagaagaaaagatttaatcaagttctcaag
aatcttcttcatgcagagtttctgagggtccaggaggagcggatcctgcatcagcaagtg
aagtgcattattacagaggagaaggtgtgcactgtatgtaaaaagaagataggtaacagt
gcatttgctcgttaccctaatgcaatagttgtgcattatttctgctccaaagaagtcaac
acgttggacacctga
DBGET
integrated database retrieval system
