Pogoniulus pusillus (red-fronted tinkerbird): 135176922
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Entry
135176922 CDS
T10504
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus04512
ECM-receptor interaction
ppus04514
Cell adhesion molecule (CAM) interaction
ppus04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135176922 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
135176922 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135176922 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppus04131
]
135176922 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ppus04090
]
135176922 (SDC1)
00535 Proteoglycans [BR:
ppus00535
]
135176922 (SDC1)
Membrane trafficking [BR:
ppus04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
135176922 (SDC1)
CD molecules [BR:
ppus04090
]
Proteins
135176922 (SDC1)
Proteoglycans [BR:
ppus00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
135176922 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
135176922
NCBI-ProteinID:
XP_064002469
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All DBs
Position
7:30973465..31000611
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AA seq
309 aa
AA seq
DB search
MKTVLAVWLVALCFQAAVPQTTNLNLPPEDLDSSGDDDDAFSGSGAGPLTDQSLTWRIPE
EPTNSSLLATPTDFYVQPFPGLESRTEKEGVSPFVTSNVVTEEPVVAVKDEGTIVDSPHE
KPDDVVTTTVRSSTTQFSSVVHVAPSEASGTVHHLEPKISSSDVPATKDVPEPTPTIHHE
GDIAAISPTTAPKDVVVPTHAEVSEDGSGDPGDFILTKDEDLVPTQNSEVLPDSGRNAKA
AGASGIMDRKEVLGGVIAGGLVGLVFAVFLVAFMLYRMKKKDEGSYSLDEPKQSNGGYQK
PHKQEEFYA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccgtgctagccgtgtggctggtggccctttgcttccaggctgctgtcccgcaa
actacaaatctgaaccttcctcctgaagatcttgattcttctggtgatgatgatgatgcg
ttctcaggttcaggtgcaggtcccctgactgaccagtctctcacttggagaatcccagaa
gaaccaacaaattcctcactactggcgacaccaacagatttctatgtacagccatttcct
gggcttgagagccgaactgaaaaagaaggagtatctccctttgtgactagtaatgtagtg
acagaggagccagttgtagctgtgaaggatgaaggaaccatcgtggattcaccccatgaa
aaaccagatgacgtggttacaacaacagtgagaagctccactactcagttctcttcagtg
gttcatgtagctccttcagaagcctcaggcacagtccatcatcttgaacctaaaatctca
agctctgatgtgccagccactaaagatgtgcctgagcccacccctaccatccatcatgag
ggagacatcgctgccatctccccgacaacagctccaaaggatgttgttgttcctacacat
gcagaggtttctgaagatggttctggagacccgggagacttcatcttgactaaggatgag
gatttagtccccacccagaactcagaagtactacctgactctgggagaaatgccaaagca
gcaggagcctcaggaattatggacagaaaagaagttcttggaggtgttattgctggagga
ttggtaggcttggtgtttgcagtgtttctagttgcgtttatgctgtatagaatgaagaaa
aaagacgaaggcagctattcgctggatgagccgaaacagtctaatggaggataccaaaaa
ccacacaaacaagaagaattctatgcataa
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