Pogoniulus pusillus (red-fronted tinkerbird): 135177161
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Entry
135177161 CDS
T10504
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135177161 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppus04121
]
135177161 (TRIM54)
Ubiquitin system [BR:
ppus04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
135177161 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
CYP38_PsbQ-like
RHH_9
Prok-RING_4
Zn_ribbon_FGT1_2
CagA
FlgN
DUF5799
Motif
Other DBs
NCBI-GeneID:
135177161
NCBI-ProteinID:
XP_064002872
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Position
7:36535829..36539928
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AA seq
398 aa
AA seq
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MNFAVGLKPLLAEARSMESLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEVPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICHTIEENGRRQKQHLGLRFDTLCSILEERKKELLQSIAQEQE
TKVQRVRGLIRQYGDHLEASSKLVESAIHAMEEPQMAVYLQHSKELLKKITDMSKVSMSS
RPEPGYENMDHFSINVDYVAEMLRTIEFQTEPLGEDEADGPGDGSEAMADEDRLDSLEVA
EGTEDVGPRQKPASSPHGETLTGTEVEGMEMRPGHRVP
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtggggctgaagccgctgctggcggaggcgcggagcatggagagcttg
gagaagcagctcatctgccctatctgcctggaaatgttcaccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgaaaatgtgccaacgacgtcttccaggcctccaaccca
ctgtggcagtcacggggctccagcgcggtgccgtcgggcggccggtttcgctgcccctca
tgccggcacgaggtggtgctggaccgacacggggtgtacgggctgcagcggaacctgctg
gtggagaacatcatcgacatctacaagcaggagtcagccaggcccctgcatgccaaggcc
gagcagcacctgatgtgcgaggagcatgaggacgagcggatcaacatctactgcctgcgc
tgcgaggtgcccacctgctccctctgcaaggtctttggggcgcacaaggactgcgaggtg
gcgccgctgcccgctgtctaccagcgacagaagagcgagctcagtgacggcatcgccatg
ctggtggcagggaatgaccggatccaggccatcatcacacagatggaggagatctgccac
accatcgaggagaatggtcggcggcagaagcagcacctggggctgcgctttgacacactg
tgcagcatcctggaggagcggaagaaggagctgctgcagagcattgcacaggagcaggag
accaaggtgcagcgtgtgcgaggcctcatccgccagtacggagaccacctggaggcctcc
tccaagctggtggagtcagctatccatgccatggaggagccccagatggctgtctacctg
cagcactccaaggagctcctaaaaaaaatcacagacatgtccaaggtgtcaatgagcagc
cgcccagagcctggctacgagaacatggaccacttctccatcaacgtggactatgtggcc
gagatgctgaggaccattgagttccagacagagcctctgggtgaggatgaggcagatggc
cctggggatggcagtgaggccatggcagacgaggatcggctggacagcctcgaggtggct
gaaggcactgaggatgtggggccgagacagaagccagcaagttccccccatggtgagacc
ctcactgggactgaggtggaggggatggagatgagaccgggccacagggtgccatag
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