Pogoniulus pusillus (red-fronted tinkerbird): 135177716
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Entry
135177716 CDS
T10504
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppus03000
]
135177716 (RC3H1)
04121 Ubiquitin system [BR:
ppus04121
]
135177716 (RC3H1)
Transcription factors [BR:
ppus03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
135177716 (RC3H1)
Ubiquitin system [BR:
ppus04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135177716 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
TPD52
Motif
Other DBs
NCBI-GeneID:
135177716
NCBI-ProteinID:
XP_064004165
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All DBs
Position
8:complement(37900873..37986302)
Genome browser
AA seq
1123 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPTGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARAPADLPSVSVTKQLQMVPRGSQLYSTQQADMFYQDPRGA
APPFEPAPYQQGVYYPTQSISRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSPQYTQPQQY
PPMGQPIYPPHYDSRRVYPPVQPYQREEMVRGSPVPIEIPQAAVPSYIPEARDRYQQAEG
YCPVAPHLSQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANVEGKAMR
DQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQGATTKSI
ISDYSPYGTHGGWGGSPYSHQNTPSQGRFNDRERLSMSDVAGHGKQLPSAEREQQLRMEL
QQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWHAMISSEQLSLELHQ
VEREIGKRTRELSLESKSSLDIKNKLGTTKQTENGQLESQSKVPAEDLALAFSSDVPNGS
ALTQENISLLSNKTTSLSLAEDPEGGGDNHDSQRVGVTPTSAP
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccaatttgcacacagact
ttcgacgaaacaatccggaagcccatcagcttgggctgcggccacactgtctgcaagatg
tgcctcaataaactccaccgtaaggcatgcccttttgaccagaccactatcaacacagac
attgaactccttcctgtcaactcagccttgctgcaactagtgggtgctcaggttcctgag
cagcagccaattactttatgtagtggagctgaagataccaagcattacgaggaggggaag
aaatgtgtggaagaattagcattgtacctcaagccacttagcagcgccagaggtgtgggt
ttgaacagcactactcagagcgtgctaagtcgtcccatgcaaaggaaacttgtgacatta
gttcattgtcagctagtggaggaagaagggcgcattagagcaatgcgtgcagcacggtca
cttggtgaaagaacagtcacagagctcattctacagcatcaaaatcctcagcagctctct
tccaacctttgggctgcagtgagagccagaggatgccagttccttggaccggcaatgcaa
gaggaggctttaaagctggttctgctggctctggaagatggatctgctctgtcacggaag
gtcttggttctctttgtggttcagaggctggagccacggtttcctcaagcttctaaaact
agcattgggcatgttgttcagcttctctacagagcctcgtgcttcaaggtgacaaagcga
gatgaagattcctccctgatgcagctgaaggaggagtttcggacatacgaagccctgaga
agggaacacgattcccagatagttcagatagccatggaagctggcctgcgcattgcgccg
gatcagtggtcctcgctgctctacggagaccagtctcacaaatcccacatgcagtctatc
attgacaagttgcagaccccagcctcgtttgcacagagtgttcaggagttaactattgct
cttcagaggactggagatccagctaacttgaatcgtcttcgacctcacctggagcttctg
gcaaacattgatcccagtccagatgcaccacctccaacatgggaacaactggaaaatgga
ctagttgctgtgaggactgtagttcatggcttggttgattacatccagaatcacagcaag
aaaggaacagatcagcaacagcctcctcagcacagcaagtacaagacatacatgtgccga
gacatgaaacagagaggaggatgcccccgaggggccagctgcacctttgcacattcacag
gaggagctagaaaagttccgtaaaatgaacaagcgtctggttcccagaagacccctgagt
gcctccctgggtcagctgaatgaggtgggcctgcctacaggagctatcctctcggaggaa
gggggagtggacttgcccaataggaaaacttctgccctgccaaatggaattgtgtcaaca
ggcagcacagtgacgcaacttatttctcgagggactgactccggttatgaaacagctctg
aagccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgtccccaagagctccatttccgccttaccggtgaaccctcatcctgtgccagct
cgagcgccagcagatctgccttcagtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagttgtacagtactcagcaagcagatatgttttatcaagatcctagaggagct
gccccaccatttgaaccagcaccctaccaacaaggagtttactaccccactcagtccatc
tctcgcttcgtccgacctcccccatcagctcctgaacctggtccaccgtatctagaccat
tatcccccctaccttcaggaccgtgtggtgagcccacagtacacacagcctcagcagtac
cctcccatgggacagcctatataccctccgcactacgacagccgccgcgtctatccccct
gtccagccctaccagcgagaggagatggtccgaggaagccctgtacccatcgaaattcca
caagcagctgtaccttcctacatacctgaagccagagacagataccagcaagcagagggt
tattgcccagtggctccacacctcagtcagataagaccttcgtgccacaggcctcatccc
agcctggatgaacttcaccgacgaaggaaagagatcatggcccagctggaagaaaggaag
gtgatttctccacctccttttgcaccttcaccaaccttgcctcatccttttcattcagag
gagtacttggatgaagacctgaaggtagctgggaaatacaagggaaatgactacagccag
tactctccctggtcctgtgacaccatcggctcctacattggaaccaaagatgcaaaaccc
aaagatgttgtggcagcaaggagtgtggagatggcaaacgtagaaggtaaagccatgcgt
gaccagcgattggacatgcagcgaagagcagcagagactggtgatgatgacctcattcca
tttggagaccgcccaactgtgtcaagatttggggcaatctctcgtacttccaaagccatg
taccagaattctggtcccatgcaggccatggcagttcagggagctaccactaaatcaatt
atttcagactacagtccttatggaactcacggtggctggggaggctctccatattctcat
caaaatacaccttctcagggacgtttcaatgacagggagagactgtccatgtcagatgtg
gctggtcatggaaaacagttgccctcagctgaacgagagcagcagctgcgcatggagctg
cagcaagtggatcatcagatcagccagcagacacaaatgcgagggctagaggctgttagt
aacaggctgctgttgcagagagaggcgactaccctggcaggccaaccacagcccccaccc
ccacctcccaagtggcatgcgatgatctcaagtgaacagctgagcttggagctacaccag
gtggaaagggaaattgggaagagaactcgtgagctgagcctggagagcaaatcttcactg
gacataaaaaacaaactgggcaccactaaacagacagaaaatggacagttagaatcacaa
agcaaggttccagctgaggacctcgcattggcattcagcagtgatgttccaaatggatca
gccttgacacaagagaatattagcctcctgtcaaacaagacaacatctctcagcctggca
gaggacccagagggaggaggagacaaccacgactcccagagagtgggagttacacccaca
tctgctccgtga
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integrated database retrieval system
