Pogoniulus pusillus (red-fronted tinkerbird): 135178317
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Entry
135178317 CDS
T10504
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03030
DNA replication
ppus03410
Base excision repair
ppus03420
Nucleotide excision repair
ppus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135178317 (RFC1)
03410 Base excision repair
135178317 (RFC1)
03420 Nucleotide excision repair
135178317 (RFC1)
03430 Mismatch repair
135178317 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppus03032
]
135178317 (RFC1)
03400 DNA repair and recombination proteins [BR:
ppus03400
]
135178317 (RFC1)
DNA replication proteins [BR:
ppus03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
135178317 (RFC1)
DNA repair and recombination proteins [BR:
ppus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
135178317 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
Rad17
AAA_14
BRCT_2
AAA_16
AAA_5
RuvB_N
AAA_18
AAA_30
RNA_helicase
AAA_33
AAA_17
nSTAND3
AAA_7
NTPase_1
AAA_19
TIP49
Motif
Other DBs
NCBI-GeneID:
135178317
NCBI-ProteinID:
XP_064005227
LinkDB
All DBs
Position
9:complement(33681634..33723469)
Genome browser
AA seq
1152 aa
AA seq
DB search
MDIRRFFGVVPAGKRQECETVKKNEKVKNGEEPLSGKKRGKESKVNNSPDEDDWKPKRIN
KKKRIIYDSDSEEEMQPVQKSKKLPEKKVSVPKPGKALKRHPVVYISETDEEDDLVNKRI
SLKPKENGTSVAGCPETTAVKKEDGKPQAKSKPVSPVKKTPTSALDYFGTSRVQRSDKKL
VASKRKEPSQSRDSTVDDEAIARQLQIEEDSELERQLHEDREFARTLAMLDETPQKKKAR
RDSGEKQAVLSIKSSPNVTERCKQSEKGKAANLTGEAKDCTPKQQTKPEHYKGSRSSPQS
DGKTAKESTNKPLALNPSSKLVSLKQKAETAEKEAGAQSSASKEKAASRKEEKTTPKKEK
ISPKKAESVSPEDSEKKRSNYEAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL
ECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQAKCEKASALGTKVIDEDGLFDL
IRTMPGKKSKYELAAETEAKKVESRPKRTPQKALAGKKNLSPFKSEADNKKLKSTPAKGD
AVKSVKKETTAVRKLMDFKWQAGGKEEATKPKENLVSEMDEDGTEKLLWVDKYKPVSLKA
IIGQQGEQSCANKLLRWLRNWHRNTSEDGQAKSNKTGGKDDGTGFKAALLSGPPGVGKTT
TASLVCKELGYSYVELNASDTRSKSSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMD
EVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKMRSLVHYCFDLRFQRPRLEQI
KGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKEKSLTYDEAKTDASRA
KKDIRLGPFDVVRKVFAAGEETSHMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGN
LKKHLLLLSRAADSICDGDIVDRQIRSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFP
SWLGKFSSAGKHDRIIQELAMHMSLRTHTCKRTVNMEYLPYLRDALVQPLKELGADGIQE
AITFMDSYCLMKEDIENIMEISTWGGSPSPFSKLDPKVKAAFTRAYNREAHLTPYSLNSV
KTSRRQSASAMAFELSEDLNVEDTKSDEDEQDTVESDAMIKQKKAKPSKPPKREKTEEIT
KKEGKRKEKTRH
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggagattctttggggttgtacctgctggaaaacgacaagaatgtgagact
gtgaaaaagaatgagaaagttaaaaatggtgaagagcctttgagtgggaagaaaaggggg
aaggaaagtaaggtgaataattcacccgatgaagatgactggaaaccaaagcggataaac
aagaaaaagagaataatctatgattcagattcagaagaggagatgcagccagtgcagaaa
tccaagaagctacctgagaaaaaagtatctgttccaaaacctggtaaagctctaaagagg
catcctgttgtttatatttcagagacagatgaagaagatgacttggtcaataaaagaatt
tccctgaagcccaaggaaaatgggacatcagtggctggttgtccagaaacaactgcagta
aaaaaggaggatggcaaaccacaagctaaaagcaaaccagtatctccagtgaaaaagact
cccacctcagcactggattactttggaacaagtcgtgtccagcgatcagataaaaaactg
gtagcaagtaaaaggaaagagccttcacaaagcagagacagcacagtagatgatgaagcc
attgctaggcaactgcagattgaagaagactcagagttggagagacagctgcatgaagac
agagaatttgctagaactttggccatgttggatgaaacaccccagaagaaaaaggctcga
agagattcaggagagaagcaggcagtgctgagcatcaagagcagtcccaacgtgacagaa
agatgcaagcagtcagaaaaagggaaagcagcaaacttgacaggtgaagcaaaggattgc
actccaaagcagcaaactaaacctgaacattacaaaggctctcgttcatctccacaatct
gatggtaaaactgccaaagagtcaacaaataagcccttggctttaaaccctagctctaag
ctggtgtctctgaaacaaaaagcagagactgctgaaaaggaagcaggagctcagagttca
gcatctaaagaaaaagctgcttcgaggaaagaagagaagacaacaccaaagaaggagaaa
atttctcccaagaaggctgagtctgtaagtcctgaagactctgaaaagaagcgaagcaat
tacgaagcctaccgaagcttccttaaccgtgagggaccaaaagcgttgggttccaaagag
atccctcagggagctgaaaactgcttggaaggcctgaccttcgtcattacaggcgttctg
gagtgcattgagagagatgaggccaagtctctgatcgagcggtatggaggaaaagtaaca
ggcaacgtcagcaagaagacaaactacctggtgatggggcgagactgtggccaggctaag
tgtgaaaaggcatctgctttagggacaaaagttatcgatgaggatgggctgtttgatctt
attcgaactatgccaggcaagaagtccaaatatgagctggcagctgaaacagaggcaaag
aaagtagaatcaagacctaaaaggacaccacagaaagctctagctggaaaaaagaatttg
agccctttcaaaagtgaagctgataataaaaaattgaagtctactcctgcaaaaggagat
gctgtcaaatctgtcaagaaagagaccactgctgttcgaaagctgatggactttaagtgg
caggctggagggaaggaagaagccaccaaacccaaggagaacttggtttctgagatggat
gaagatggcacagagaaactgctatgggtagacaaatacaagcctgtgtctcttaaggca
ataattggacagcagggcgagcaaagctgtgccaacaaactactccgatggctcaggaat
tggcacaggaatacctctgaagatggacaagcaaagagcaataaaactggaggcaaagat
gatggtactggttttaaagcagcattactttctggtccgcctggagttggcaaaactact
acagcttctttggtttgtaaggagctggggtacagctacgtggagctgaatgccagtgac
actcgcagtaagagcagcctgaaggaagtagttgctgagtcgctgaacaacaccagcatc
aaagacttctgctctggcacatcctcatcagttagcgggaagcatgtattgatcatggat
gaagtggatggtatggcaggcaatgaagacagaggagggattcaggagctgattggtttg
attaggcacacaaagatacccatcatctgcatgtgtaatgatcgaaaccatcctaagatg
cgttccttggtccactactgctttgatcttcgcttccagaggcctcgtctagagcagatc
aagggggccatgatgtctattgcttttaaagaaggcttaaagattccaccacctgctatg
caagagataatcctggcagcgaatcaggacatcaggcaggttttacataaccttaacatg
tggtgtgcaaaagagaaatcattgacttatgatgaggctaaaacagatgccagcagagcc
aaaaaggatatcagactgggaccttttgatgttgtccggaaggtttttgctgcaggagag
gaaacttctcatatgtctctcatagacaagtcagacctcttcttccatgattattcccta
gcacctctctttgtccaggagaactatgtacatgtgaaaccagctgctgctggaggaaac
ctgaagaagcacttgctgctcttgagcagagcagctgatagtatatgtgatggtgatata
gtggacagacagattcgtagcaagcaaaactggaaccttcttccaacacaggctatttat
gcaagtgttctcccgggggagctgatgagaggttacatgtcccagtttcctgtctttccc
agctggctggggaaattttcatctgcaggcaagcacgaccgaatcattcaggaactggcg
atgcacatgagcctcagaacccacacctgcaagaggacagtgaacatggagtacttgcca
tacctgcgggatgcacttgtccagcccttgaaggagcttggagcagatggcatacaagaa
gccataacattcatggactcttactgcttgatgaaagaagatattgaaaacatcatggaa
ataagcacatggggaggcagccccagccctttctccaagttggatcccaaggtcaaagca
gctttcacacgtgcctacaacagagaggcccacctgactccttattccctgaactctgtc
aagacatccaggaggcagtcagcatctgccatggccttcgaactgagtgaagacctgaat
gtggaagacaccaaatctgatgaggatgagcaagatactgttgaaagtgatgcaatgatt
aagcaaaagaaggcaaagccttccaagccaccaaaaagagagaaaactgaagaaataaca
aaaaaagaagggaaaaggaaagagaaaacaagacattaa
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