Pogoniulus pusillus (red-fronted tinkerbird): 135178549
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Entry
135178549 CDS
T10504
Symbol
LSM6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03018
RNA degradation
ppus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135178549 (LSM6)
09123 Folding, sorting and degradation
03018 RNA degradation
135178549 (LSM6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135178549 (LSM6)
03041 Spliceosome [BR:
ppus03041
]
135178549 (LSM6)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135178549 (LSM6)
mRNA degradation factors
5'-3' decay
Lsm complex
135178549 (LSM6)
Spliceosome [BR:
ppus03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
135178549 (LSM6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
135178549
NCBI-ProteinID:
XP_064005532
LinkDB
All DBs
Position
10:complement(1760828..1765761)
Genome browser
AA seq
80 aa
AA seq
DB search
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
GDAFIRGNNVLYISTQKRRM
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atgagtctacggaaacaaacccccagtgacttcctaaagcaaatcattggaagaccagtc
gttgtcaaattgaattctggagtagattaccgaggtgtcctggcttgcctggatgggtat
atgaacatagctctggaacagacagaagagtatgtgaatggacagctaaagaacaagtat
ggagatgcgtttatccgaggaaataatgtgttgtacataagcactcagaagagaaggatg
tga
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