Pogoniulus pusillus (red-fronted tinkerbird): 135180516
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Entry
135180516 CDS
T10504
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135180516 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135180516 (PARN)
Enzymes [BR:
ppus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
135180516 (PARN)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
135180516 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
135180516
NCBI-ProteinID:
XP_064009065
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All DBs
Position
13:complement(11541513..11588923)
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AA seq
638 aa
AA seq
DB search
MEVTRSNFKDNLSKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKRH
SMDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGTGSLSYISPNSAKCPVTIPDDQKKF
IEKVVEQIEDLLKNEENENLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVNEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSDFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTAAEQLHEAGYDAYITGLCFISMANFLGSFLSPPKTHVSARSELIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNSFTSTSTVGKRSMSPIQEETGSDDMEEREGQEPEYNQTDCFAES
LPDGKKRAKKFKKIETERLPAGGLTTSSTGIFEVPETW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaccagaagcaattttaaggataacttaagcaaagtatatgaagccattgaa
gagtcggacttcttggccatcgatggagagttttcagggatcagtgatgggccctcagtt
agtgcattaaccaatggctttgacactccagaagaaaggtatcagaagcttaaaaggcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgatcacacagaa
gaaaagtatataatgaaatcatttaacttctatatttttccaaaaccctttaacagaagt
tcaccagatgtcaaatttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaatggaattccatacttaaatcaggaggaagaaaga
cagctaagggaacaatatgatgaaaaacgttctcaggccaacggtacaggatcgctgtca
tacatttctcctaattctgcaaagtgtcctgtaacaattcctgatgatcagaaaaaattc
attgagaaagtagtggaacagatagaagacttactaaagaatgaagaaaatgaaaatttg
gaactggagccatgtacaggatttcagaggaaattaatttatcagactttgagctggaag
tatccgaaaggtatccatgttgaaactttggagtcagataagaaggagagatatattgta
attagtaaggtcaatgaagaagaacgaaaaagaagagaacagcagaaacaagcaaaagaa
caggaagaactgaatgatgcagtaggattttccagagtcgttcatgccattgctaattct
ggcaagcttgttatagggcacaatatgctgctggatgtcatgcataccatacaccagttc
tattgtcctttacctgatgacctgagtgatttcaaggaggtaacatcatgtgtctttccc
cggctattggatactaaactgatggcaagtacacagccttttaaggagatcattaataat
acatccctcgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaaggttttccaagttatgatacagctgctgaacaacttcatgaagcagga
tatgatgcttacattactggactgtgcttcatttccatggctaatttcttaggttcattc
ctcagtcctccaaaaacccatgtgtctgctagatcagaactcattgaacctttttttaac
aagctctttcttatgagagtaatggacataccatatctcaatctggaaggacctgacttg
caaccaaaacgagatcacgttcttcatgtcacttttcccaaagagtggaagactagtgac
ctttaccagcttttcagtgcctttggtaacattcaaatttcatggattgatgatacatca
gcatttgtatcactgagccagccagaacaagtacagatagctgtaaacaccagcaggtat
gctgaaagttataggatccagacatatgcagaatatgttgagaaaaagcatgaagagaaa
caggcaaagagaaaatgtacagaagatagttggaaggagatggagaggaagagattaaaa
actcaatgcacaccttacgtttcccaaagtcgatactactgtgttaacagttttacaagt
accagtacagtgggaaagagaagcatgagccctattcaggaagaaactggctcagatgat
atggaagagagagagggccaagagccagaatataatcagacagactgctttgcggagtcc
cttccagatggtaagaagagagccaaaaagttcaaaaagattgagacagaaagacttcca
gcaggaggcctcacaactagttccactggaatttttgaagtccctgaaacatggtag
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