Pogoniulus pusillus (red-fronted tinkerbird): 135181705
Help
Entry
135181705 CDS
T10504
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135181705 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppus03000
]
135181705 (CNOT4)
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135181705 (CNOT4)
04121 Ubiquitin system [BR:
ppus04121
]
135181705 (CNOT4)
Enzymes [BR:
ppus01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135181705 (CNOT4)
Transcription factors [BR:
ppus03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
135181705 (CNOT4)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135181705 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135181705 (CNOT4)
Ubiquitin system [BR:
ppus04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135181705 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
135181705
NCBI-ProteinID:
XP_064011088
LinkDB
All DBs
Position
15:5312093..5405030
Genome browser
AA seq
710 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQSPIDKPSDSLSIGNGDSSQQITNSDTPSPP
PGLTKPNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSND
WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKEL
SVQDQPSLSPTSLQNPSPHTTTAKGPGSGFLHPAAPTNANSLSSTFPVMPQRFPQFQQHR
AVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPISD
NSSSVESLNMKEWQDGLRALLPNININFGGLPNASSPSNANHSVPTSNTATTDSLSWDSP
GSWMDPAIITGIPASTGNSLDTLQDDNPPHWLKSLQALTEVDGPSAAPSQTHHSNPFGTQ
IPLHRASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgatgctaaggaagaccctgtggaatgccccctctgcatggaacct
ctggaaattgatgacatcaacttcttcccttgcacctgtggctaccaaatctgccgtttc
tgttggcatcgtatccgcactgatgaaaatggactttgtcctgcttgcagaaagccatat
ccagaagatccagcagtgtacaagccactctcccaggaagagctgcaaaggataaaaaat
gaaaagaaacagaaacaaaatgagaggaaacagaagatatcagagaaccgcaaacatttg
gccagtgtacgggttgtgcagaagaaccttgtcttcgtggtagggttatctcagcgccta
gcagatccagaggttttgaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcattaataacagcacatcatatgcaggctcacagggtccaagtgccagtgcatat
gtaacctacattcggtcagaagatgctctcagagccatacagtgtgtcaataacgtggtg
gtagacggcagaacacttaaggcatcattaggtacaacaaaatattgcagttattttcta
aaaaatatgcagtgtccaaaaccagactgcatgtatctacacgagctgggggatgaagca
gccagttttacaaaagaagaaatgcaggcgggtaagcaccaggaatatgaacagaaacta
ctgcaagagttatacaaactaaaccccaactttctccagttatctacgggtacagttgac
aagaacaagaacaaagtaacagcactgcagagccctatcgacaaaccttcagattccctc
agtataggaaatggtgacagctcccaacagataacaaacagtgacacaccttcaccaccg
cctggtttaacaaaacccaatccagtcatacccatcagttcatctaatcacagtgcacgg
tctccttttgaaggggctgtaacagaatcacagtcactcttctctgacaactttcggcac
cctaaccccatccctagcgggcttcctccattccccagctctccacagacttcaaatgac
tggcccacagcaccagaaccacagagcctcttcacatcagagactataccagtgtcctcc
tccacagactggcaagcggcttttgggtttggctcctccaaacagcaagaggacgactta
gggtttgacccctttgacatcacccgcaaagccttagcagacctgatcgagaaggaactg
tcagtccaagaccaaccttccctctcgcccacatctcttcagaacccttccccacacact
acaactgccaaagggccaggctctggattcctgcatcctgctgcacccacaaatgccaac
tctctcagtagcacctttccagtcatgccacagaggttcccacagtttcaacagcatcga
gcagtttacaactccttcagttttccaggccaagcagctcgctatccttggatggccttt
ccacgcaatagcatcatgcacttgaaccacacagcaaatcccacctcaaatagtaatttc
ttggacttgaatctcccaccacaacacagcacaggtctgggagggatccctatatcagac
aacagcagttctgtagagagtttaaatatgaaggaatggcaggacgggctaagggcactt
ctaccgaacattaacatcaactttggtggactgcccaatgcttcttccccctccaacgcc
aaccacagtgtaccaacgtccaacactgccaccaccgacagcctgagttgggacagccct
ggcagctggatggaccctgcaatcatcacaggtatcccagcctccacaggaaacagttta
gacacccttcaagatgacaatcctccacattggctaaaatctctccaggccctcacagag
gtggacggccccagtgcagcaccatcacagacccaccacagtaaccccttcggcacacag
atccctctgcacagagccagttggaatccctactctcctccttcgaaccccaccagcttc
cattctccacctccaggctttcagacagccttcagacctcccagcaaaacccccacagat
ctactacagagctcagcgctggatcgtcattag
DBGET
integrated database retrieval system
