Pogoniulus pusillus (red-fronted tinkerbird): 135181740
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Entry
135181740 CDS
T10504
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135181740 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppus03041
]
135181740 (PRPF40A)
Spliceosome [BR:
ppus03041
]
Complex A
U1 snRNP components
U1 related factors
135181740 (PRPF40A)
Complex B
135181740 (PRPF40A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
WW_2
Motif
Other DBs
NCBI-GeneID:
135181740
NCBI-ProteinID:
XP_064011141
LinkDB
All DBs
Position
2:complement(6366199..6403115)
Genome browser
AA seq
1026 aa
AA seq
DB search
MSGGDSAAAAATASPQPLPFSLPKPPPLMQLTPGDAVRPVSSAADQSPKSARLAGRPDWP
TGKPVSLLAPLLPPRGEPEPLMPFGPSSRQPLRGRLLGRCSGGSLLSPSMRPGGVDRGSL
MMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMM
MSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQSSVLFRPQTTHPVVCAAQQTTTTTSSVN
EEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDAGK
PYYYNSQTKESRWAKPKELEDLEAMIKAEENSTKPEDSTPATSTPAAAAEATNATTAAAT
ETAAAVTTTAAASAATAAPEADAAAASSVVENESGGTATAEEQGQAASAPAGQEQSGEAA
ANTTDDSSKQEASGDAASKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWE
QAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEK
MTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKN
ILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEK
QKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPVFP
SGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTL
DAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRD
RFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGS
ESEDDDSHSKKKRQRSESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIER
EKDKKDRDRESEKDRARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLLE
QLDEDQ
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggggactcggcggcggcggcggcgaccgcctcccctcagccgctcccgttc
tccttgccgaagccccctcccctcatgcagctgacgccgggggacgccgtccgtcctgtc
tcttccgccgcggaccaatcaccgaagagcgctcgcctggcgggccgcccggattggccg
actggcaagccagtcagcctgctggccccgttgctcccgccccgcggggagcccgagccg
ctcatgccctttggcccctcgtcgcggcagccactccgagggaggcttcttggcaggtgc
agcggcggcagcctgctcagcccctccatgcggcccggcggcgtcgaccgcggatccctt
atgatgggacacccaggaatgccacattatcccccaatgggaatgcaccctatgggtcag
agacccccaaatatgccaccagttccacatggtatgatgcctcagatgatgccccccatg
ggaggaccaccaatggggcagatgcctggaatgatgcagtcagtaatgcctggaatgatg
atgtcccacatgtcccaagctgccatgcagcctacagttccaccaggagtgaacagtatg
gatgcacaagtaggtgtcacacctcctggaactcagagctctgttttgtttcgccctcag
acaacgcatcccgtcgtttgcgctgcccagcaaaccaccaccaccaccagctctgttaat
gaagagcactctaaacagaaatctacatggacagaacacaaatcaccggatggaaggacg
tattactataacactgaaacaaagcagtctacgtgggagaagccagatgacctcaaaaca
cctgctgagcaattgttgtctaagtgtccctggaaggagtataaatctgatgctggaaag
ccctactattacaattcccaaacaaaggaatcacgctgggcaaaacccaaagagcttgag
gatcttgaagcaatgataaaagctgaagaaaacagcacaaagcctgaagattccactcca
gccacatcgactccagctgcagctgcagaagccacaaacgccaccaccgcagccgcaacc
gaaactgccgctgctgtcaccaccaccgctgctgcttctgcagccacagcagcccctgaa
gcagatgctgctgcagcttcttctgtggtagaaaatgaaagtggtggcacagccacagct
gaggaacagggacaagcagcttctgcacctgctgggcaggaacagagtggagaagctgca
gccaacacaacagatgactcttccaagcaggaggcctcaggagatgctgcttcaaagaaa
gaggatgatgatgcccagcctgttaagaagacctatacatggaatacaaaggaagaagcc
aagcaagcatttaaagagctgctgaaagaaaagcgagtgccatccaatgcttcttgggag
caagcaatgaaaatgatcattaatgatcccagatacagtgctttggctaaactcagtgaa
aaaaagcaagcttttaatgcttacaaagttcagacagaaaaagaagagaaggaagaagca
agatcaaagtacaaagaggctaaagaatcctttcagcgtttccttgaaaaccatgagaag
atgacctccacaacaagatacaaaaaagctgagcagatgtttggggagatggaagtctgg
aacgccatatcggagcgtgatcgccttgagatctatgaagatgtcctgttttttctgtct
aagaaggagaaggaacaagccaaacagttacgaaagaggaactgggaagctttgaagaac
atactggacaacatggccaatgtcacttactgtaccacttggtctgaggcccagcagtat
ctgatggacaatcctacctttgcagaagatgaagaactgcaaaacatggataaggaggat
gcactgatttgttttgaggagcacatcagggcgttggaaaaagaagaggaagaagaaaaa
cagaagagtttgcttagggaaaggcggcggcagcggaagaacagagaatcttttcagctg
tttttagatgaactacatgagcatggccaactacattccatgtcctcttggatggagttg
tacccaaccataagctctgacatcagattcaccaatatgctgggtcagcctgtttttcca
tcaggatccacagcacttgatcttttcaagttctatgttgaggatttgaaagcacgttac
cacgacgagaagaagataatcaaagacatcttgaaggacaaaggatttgtggttgaggtg
aatacttcttttgaagattttgttactgtcatcagctcaaccaaaagagctacgacttta
gatgcagggaacatcaagctggctttcaacagtctgctagaaaaggcagaagcccgtgaa
agagagagggaaaaggaagaggctcgcaaaatgaagcggaaagagtctgccttcaagagt
atgctgaagcaagctactcctccaatcgagttggatgctgtctgggaagatatcagggat
aggtttgtgaaagaaccagcatttgaagacatcactttggagtctgaaagaaaaagaata
tttaaagatttcatgcatgtactagagcacgagtgccagcaccatcattcaaagaacaag
aagcattctaagaagtctaaaaagcatcacaggaagcgctctcgttctcgctcaggctca
gaatctgaggatgatgacagccactcaaagaagaaaaggcaacgttcagagtctagatca
gtttctgagcgttcttccagtgcagaatctgagaggagttacaagaagtcaaaaaaacac
aagaaaaagagcaagaagagaaggcacaagtctgattcaccagaatctgacattgaacga
gaaaaagacaagaaagaccgagacagggagagtgaaaaggatagagcaagacagagatct
gaatcaaaacataaatcacctactaaaaaacgacctggaaaggactctgggaactgggac
acttctggcagcgagctgagcgagggagagctggaaaaacagaggaggactcttttggaa
caactggatgaagatcaatga
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