Pogoniulus pusillus (red-fronted tinkerbird): 135181898
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Entry
135181898 CDS
T10504
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppus03016
]
135181898 (RTCB)
Enzymes [BR:
ppus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
135181898 (RTCB)
Transfer RNA biogenesis [BR:
ppus03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135181898 (RTCB)
Prokaryotic type
tRNA splicing ligases
135181898 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
135181898
NCBI-ProteinID:
XP_064011449
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All DBs
Position
15:11777191..11789260
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagctacaatgatgagctgcagtacctggacaagatcgacaagaattgctgg
cggatcaagaagggcttcgtgccgaatatgcatgtggaaggcgttttctacgtgaacgac
cctttggagaagctgatgttcgaggagctgcgcaatgcctgccgcggtggaggtgcaggt
ggctttttgcctgctatgaaacagattgggaatgtggctgcattacctggcattgtgcat
agatcaataggccttccagatgtccattctggctatggctttgccattggcaacatggct
gcctttgatatgaatgatcctgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttactgcgtacaaatttggatgaaagtgacgtgcagcctgtgaag
gagcagcttgcccaggctatgtttgaccacattcctgttggtgttggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactagagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaagaatatggaagaatgctg
caggctgacccaaataaggtctcctcgagagcaaagaagagaggcctgcctcagctggga
accctgggagcaggaaatcattatgctgagatccaggttgtggatgacatttacaacgag
tacgctgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagt
ggcagcagaggtctgggccaccaggttgccacagatgctttggtggctatggaaaaagcc
atgaaacgggacaaaatcatcgtgaatgatcgccagctggcatgtgccaggatcgcctcc
gcagaggggcaggattatttgaagggaatggcagctgctgggaactacgcgtgggtcaac
cgctcttctatgacttttctcaccagacaggcctttgccaaagtcttcaacaccacccca
gatgaccttgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagcag
catgtagtggatggaaaggagcgcactctgctagtgcacaggaagggatcaaccagggcc
ttccctccacaccatcctcttattgctgttgattatcaactgactggacagcctgttttg
atcggtgggactatgggcacctgtagctatgttcttacaggcacagagcaaggcatgact
gagaccttcggaactacctgccatggagctggacgtgccctgtctcgagccaaatctcga
cgcaacttggacttccaggatgtgctggacaagttggctgacatgggcattgctatccgt
gttgcttctcctaaattggtcatggaagaagcaccagagtcttacaagaatgtgacagat
gtggttaacacctgccatgcagctggtatcagcaagaaagccattaaattgagacctatt
gctgttataaaaggctag
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