Pogoniulus pusillus (red-fronted tinkerbird): 135184041
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Entry
135184041 CDS
T10504
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03013
Nucleocytoplasmic transport
ppus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135184041 (UPF3B)
03015 mRNA surveillance pathway
135184041 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135184041 (UPF3B)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135184041 (UPF3B)
mRNA cycle factors
P-body specific factors
135184041 (UPF3B)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
DUF6980
Motif
Other DBs
NCBI-GeneID:
135184041
NCBI-ProteinID:
XP_064015583
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All DBs
Position
19:17977044..17984808
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AA seq
482 aa
AA seq
DB search
MKEDKENARPKERRGPGAGPGALLATGTGPGTATGTDGRAGGAELDRLERPKDKKETLSK
VVIRRLPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRD
RFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDE
KLTSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEE
RRKWKEEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIKLLKKPEKDEKDLERKEKSKKL
EKEALREEKNASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDFERDREYERAQREKL
RRQEEERRRQKERFEKEKLYRRKEEDVKKERDLLREKGKKSDLTDFTSSMDKSEKVTKDD
KKEDTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKPTDQGADKKQESESSNMKE
EE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggaaaacgcaaggcccaaggagcgccgcgggcccggcgccgggccg
ggggccttgctggcaacggggacgggaccggggaccgccaccggcacggatggcagagcc
ggcggagccgagctcgaccgcctcgagcgacccaaggacaagaaggagacgctgagcaag
gtggtgatccgccgtctgccgcccagcctgacgaaggagcaactggaggagcacctccag
cccctgcccgagcatgactacttcgagttcttcgccaacgactccagcttgtaccctcac
atgttctcgagagcctacatcaacttcaaaaaccaggaagacatagtcctcttcagggat
cgttttgacggctatgtttttgtcgaccacaaaggtcaggaatatgctgccatagttgag
tttgcaccttttcagaaagctgcaaaaaagaagagtaagaaaaaggatgccaaaactgga
accattgaagatgatccagaatacaagaagtttttggaaagttacagtgcagatgatgaa
aaattaacctccactcctgaaacgttgctggaggaaatagaggcaagaaacaaagagcta
atagctaaaaagactactcctttgttgaacttcttgaaaaacaaacagagactgagagaa
gaaaaaagagaggagaggagaaggagagaattggaaagaaaaaggcaaagagaagaagaa
agaagaaaatggaaggaggaggaaagaagaaagagaaaggaagcagaaaagttgaagaaa
gtagacagatgcccagaaaaagaaagagacagatcaaaagaagaaccaaagattaagcta
cttaagaagcctgaaaaagatgaaaaagacttggagagaaaagaaaaatccaagaaactg
gaaaaagaggctctgagggaggaaaaaaatgcgagtagtgcatctgccaaacgatctgat
ggggagacaaaagaagagaaggcgaaaaaatcagaagatgagtgtgtaaaggactacagg
gaccgagatagagattttgaaagagacagagaatatgagagagcacagagagagaaactg
agacgccaagaagaggagcgtcggaggcagaaagagcgctttgaaaaagagaagctttat
agaagaaaagaggaagatgtgaaaaaggagagagacttgctcagagaaaagggaaagaaa
agtgatcttacagactttaccagcagcatggacaaatctgagaaagtaaccaaagatgat
aagaaagaagatacaattaagagggatcgtatcagaaacaaggatcgtccagcaatgcag
ctgtaccagccaggagcgcgaagccgaagcagattgtgtcagtatgaagacagtgctgca
aagcccacagatcagggagcagataagaaacaagagagtgaaagcagtaatatgaaggaa
gaggagtga
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