Pogoniulus pusillus (red-fronted tinkerbird): 135185093
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Entry
135185093 CDS
T10504
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
135185093 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ppus01009
]
135185093 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ppus04515
]
135185093 (PCDH1)
Protein phosphatases and associated proteins [BR:
ppus01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135185093 (PCDH1)
Cell adhesion molecules [BR:
ppus04515
]
Cadherins
Protocadherins
135185093 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
135185093
NCBI-ProteinID:
XP_064017532
LinkDB
All DBs
Position
22:2499726..2607032
Genome browser
AA seq
1222 aa
AA seq
DB search
MQTPLEQRAKGAQRRPHPTPLQRRMKPLASCLGLWLLCQLPALVSGTRAIYRVKEEQPPN
TLIGSLASDYGLPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQNLLPGQP
CYLEFEVSITDLILNSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNIGALFPIPT
AMDRDSGANGVASYELTAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIK
VQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSDQGA
NAEIDYSFHQASDMVRRLLRLDRTTGLITVQGPIDREDVNMLKFSVMAKDKGANPKSART
QVVVNIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENAVVT
CVVAGDVPFQLRQASESGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSSTNS
LKVQVVDVNDNAPVFSQSYTEVAFPENNEPDDLVMEVSASDADSGSNAKLVYSLLTDPSS
KGSFAIDPDSGEIRVKAVLDREQRERYEFSVVAADKGSPSLRGTASVAINVMDRNDNDPK
FMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTILSSI
SFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILPHTS
PGQQVSKVKAEDIDSGVNAELTYSITGGNPFELFQISPQSGDITLEKEILRKHHGLHRLV
VRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSKQRS
NILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKSKNK
VKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSN
SPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNK
QLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERT
TPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDSCWMPGQSSPSRRPKNALKLS
TFVPYQDRGSQEQVGNGSPRLSDERSTKMANLRLLPTYSAFSNSSHEPCKDSPLEEIPLT
QTSDFQPTATPSSQPAKREIYL
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgccgctggagcagcgcgcaaagggagcgcaacgccgaccgcatccaactccc
ctgcagcgcaggatgaagcctctggcgtcctgcctgggcctgtggttgctctgccagctg
cctgccctggtctccgggacgcgtgcgatctacagagtgaaggaggagcagccccccaac
accctcatagggagcctggcctctgactacggcctcccagacgtggggcacctctacaag
ctggaagtgggggccccatacctacgtgtggatggcaagaccggggacatatacaccaca
gagacctccatcgaccgggagagcttgcgtgagtgccagaacctcctgcccggccagccc
tgctacctggagttcgaagtgtccatcactgacttgatcttgaacagcagcccacgcctg
ctggaggggcagatagaggtgcttgacatcaatgacaacacccccaacttcgcttcaccc
gtcctcaccctctccatccccgagaacaccaacattggggcgctcttccccatccccacg
gccatggaccgggactcaggcgccaacggtgtggcctcctacgagctgacggctggtccg
gaggcgcaggagctctttgggttgcaggtggcagaggatcaggatgagaagcagcctcag
ctgatcgtcatggggaacctggacagggagcagtgggactcctacgatctgaccatcaag
gtgcaggatggaggcaaccctccgcgggccagcagcgccctgctgcgcatcaccatcctg
gacatgaacgacaacgcgcccaagttcgagaaggctctctacgaggctgagctgtctgag
aacagccccgtggggcactctgtcctccaggtgaaagccaacgactcggaccaaggcgcc
aacgcagagatcgactactccttccaccaggcttcggacatggtgcgccggctgctgcgc
ctggaccgcaccacggggctcatcaccgtgcagggccccatcgaccgcgaggacgtcaac
atgctcaagttctccgtcatggccaaggacaagggggccaaccccaagagcgcccgcacc
caagtggtggtcaacatcaaggacatgaacgacaacgcgccctccatagagatccggggc
ataggcttggtcacccaccaggatggcatggcaaacatctcggaggacgtgccagtagag
acagcagtagctctggtgcaggtgtccgaccgagacgagggtgaaaacgcggtggtgacc
tgcgtggtggccggggatgtgcccttccagctgcggcaggccagcgagtcggggagcgac
agcaagaagaagtacttcctgcagaccaccacgccgctggactacgagtcggtgaaggag
tacaccatagagattgtggcggtggactcggggaacccacccctctccagcaccaactcc
ttgaaggtgcaggtggtggacgtgaacgacaacgcgcccgtcttcagccagagctacacc
gaggtggccttccccgagaacaacgagcccgacgatctggtgatggaggtgagcgccagc
gacgccgacagcggctccaacgccaagctggtttactccctgctgacggacccctcctcc
aagggctccttcgccatcgaccccgactccggggagatccgggtgaaggcggtgctggac
cgagagcagcgggagcgctatgagttctcggtggtggcggcagacaagggcagccccagc
ctgaggggcacagcgtctgtggccatcaacgtcatggacaggaacgacaacgaccccaag
ttcatgctgagcggctacaacttctcggtgatggagaacatgccgcccctcagccccgtg
ggcatggtgacggtgattgatgctgacaaaggagagaacgcccgcatccagctgtcggtg
gagcaagacaacggcgactttgtcatccagaatggcaccggcaccatcctctccagcatc
tcctttgaccgggagcagcagagcacctacactttccgcctcaaggcggtggacggcgga
gatcctccgaggtctgcttacgtcggggtgaccatcaacgtcctggatgagaacgataat
gcccctttcatcacctccccctccaacgccacctacaaacacatcctgccccacaccagc
cccggccagcaggtgagcaaagtcaaggcggaggacatcgactccggcgtcaacgcggag
ctgacctacagcatcacaggaggcaatcccttcgagctcttccagatctcccctcagagc
ggggacatcaccctggagaaggagatcctgcgcaagcaccacggcctgcaccgcttggtc
gtgcgcgtcaatgacaagggcaagccctcgcggcacggcacggcgctggtccacttctac
gtcaacgagacgctggccaaccgcacgctgctggacacgctggtggggcacagcctggac
accccactggacatagacattgctggagaccctgagtatgagcgcagcaagcagaggagc
aacatcctcttcggggtcatcgccggcatcgtggctgtcaccttggtcatcgtgctggtt
gtcctggtgcgctactgccggcagcgggaggccaagagcggctaccaggcgggcaagaag
gagaccaaggacctgtacgcgcccaagcaggccagcaagagcggtaagagcaagaacaag
gtgaagaagagcaagtctccgaagccccccaagcccacggaggacgaggaggagacaggg
ctgcagaagtcactcaagttcaacctcatgaacgactccgtcagcgacagcccccgaatc
cacctgcccctcaactacccgccgggcagccccgacctggggcgccactaccgctccaac
tcgccgctgccctccatccagctgcagcctcagtcgccctctgcctccaagaagcaccaa
gtggtgcaggacctgccggccaccaacacctttgttggcaccggggacaacaactcgacg
ggctccgagcagtactcggactacagctaccgcaccaacccccagaaatacaccaacaag
cagttacctcatcgccgagtgacgttctctgcagccagccaggctcaggacctgcaggac
ccttcccagcacagctactatgacagtgggctggaggaatccgagacccccagcagcaaa
tcctcctcgggaccccgcatcgggcccctggccctgcccgaggaccactacgagcgcacc
acccccgacggcagcatcggggagatggagcaccccgagaatgatctccggcctctgccc
gatgtagccatgactgggacctgtacccgggagtgcaccgagttcgggcactcggacagc
tgctggatgccaggccagtcctcccccagccgcaggcccaagaacgccctcaaactctcc
acttttgtgccttaccaagacagagggagccaagagcaagtcggcaacggcagccccagg
ctctcggatgagcgcagcaccaaaatggccaacctccgcctgctccccacgtacagtgcc
ttctccaacagtagccatgagccctgcaaggactctcccctggaagaaattcctctcacc
cagacctcggacttccaaccgactgctacgccctcctcccaacccgccaagagggagatc
tacctgtga
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