Pogoniulus pusillus (red-fronted tinkerbird): 135185117
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Entry
135185117 CDS
T10504
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03440
Homologous recombination
ppus03450
Non-homologous end-joining
ppus04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
135185117 (RAD50)
03450 Non-homologous end-joining
135185117 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
135185117 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppus03032
]
135185117 (RAD50)
03400 DNA repair and recombination proteins [BR:
ppus03400
]
135185117 (RAD50)
DNA replication proteins [BR:
ppus03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
135185117 (RAD50)
DNA repair and recombination proteins [BR:
ppus03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
135185117 (RAD50)
BRCA1-C complex
135185117 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
135185117 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
NPV_P10
DUF2703
AAA_29
AAA_13
Motif
Other DBs
NCBI-GeneID:
135185117
NCBI-ProteinID:
XP_064017583
LinkDB
All DBs
Position
22:complement(4363876..4404955)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGNSFVHDPKVANETDVRAQIRLQFRDVNGELLAVQRSMICTQKGKKTEFKTLESVITR
TRHGEKVSLSSKCAEIDREMISALGVSKAVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRMKQSSKVKECQTELKYLKQNKEKAQEIQDHLSNREAQLVASKEN
VKSIESQLEPLKSSLAAVEQNLMKVMKLDNEVKALESRRRQMEKDNQDLQQKMEKVFQGT
DEQLRDRYENHQKTVKEKEKRLSECKNELDRATKECQRYNSEKSELLVEQGRLQLQADRH
QEHISTRDSLVQSLAAQLGIDGFERAPFSDRHLASFHALLRERQDREAEAAERALREYAR
KEAMKQKQIEEKRDKKTGLERTIDLKSDIQSKKQEELKNVRHELQQLEGFSDRILELDQE
IAKTEHELEKAERSSNIETLEQEVRTLQNEKMNLDKALRKLDQEMEQLNLHTMTITQLEM
LKKDKADKEEQIRKVKSRHSEELTSLMGYFPNKKQLEDWLHDQNRKVHQARDNLAALNKR
LASVECDKTHTSTELKKKEEQLDQHETRLFDVCGSQDFDSDLKRLQDDIEKSSKQRAVLA
GATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKKRDEMMSLKPLRQTVDELQHRDIPNLRNKIQNANRDLAALKAEIEEQEAALQTALT
EEESGKACLQDITLMERYQTDIRDVERRIAQQEAKLLGVDLSRSVLQVSQEKQERKHLWD
TVTGKIELKQKLKQDQQTQIQQLKSEVNDLKAEKLQISSSMQRRRQLEEQSVELTTEVQS
LCREIKEAKEQIFPLNAALDELQQEKEDLVNKRTACNKEAQEKINGIKEKVKDINKHVKE
IENYIQQRKADYKKQKEAELEELNSQLAACEKRKEKISKEMETIRQDIDTKKIQERWLQD
NLTLRERNKELKGVEDNIKHLVKEMGEMKVPQLKNDQKQLEERIESLKRNHHLALGRQRG
FEEEIVRFRKELREPQFRDAEETYREMMIVMRTTELANKDLDLYYKALDKAIMTFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDADENVSASDKRRSYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNLDQCSEIMRCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagatcgagaaaatgagtatcctcggcgtgaggagctttggggtggaggataaa
gacaaacagattatcactttctttagtcccttaactattttggtggggccaaacggcgca
ggaaaaacgactatcattgaatgtcttaagtacatatccactggagattttcctcctggc
accaaaggaaactcgtttgtacatgatccaaaggttgccaatgaaacagatgtgagagct
cagattcgactgcagtttcgagatgtaaacggagagctcctggctgtccagagatccatg
atctgcacccagaaaggcaagaaaacagaattcaaaacactggaatctgtcattactaga
acaaggcacggtgagaaggtgagcctgagctccaagtgtgcagaaattgatcgagagatg
atcagtgcccttggtgtgtccaaagcagtgctcaacaacgtcatcttctgccaccaagaa
gaatccaactggccattaagtgaagggaaagccctcaagcagaaatttgatgagatcttc
tcagcaacaaggtacattaaagccctcgaaactctccgtcaggtacggatgaaacaaagc
tccaaagtcaaagagtgtcagacagaactgaagtacctaaagcagaacaaagagaaagca
caggaaatccaggatcatctgagcaacagagaggctcaactggtggcttctaaggagaat
gtaaaatccatagagagtcagcttgagcccctaaagagttctctggcagcagtggaacag
aatctcatgaaagtgatgaagctggacaacgaggtgaaagccctggagagcaggaggagg
cagatggagaaagacaatcaagatctgcagcagaagatggaaaaggtttttcaaggaaca
gatgaacaactaagggacaggtatgaaaaccaccagaagacagtgaaggagaaggagaag
aggttgtcagagtgcaagaatgagttggatagagccaccaaagagtgccagagatacaac
agtgagaaatcagagctgcttgttgagcaaggtcgtctgcagctgcaggcagatcgtcac
caggagcacatctccaccagggactcgctggtgcagtccctggcggcgcagctggggatc
gacggcttcgagcgagcgcccttcagcgacaggcacctcgccagcttccacgccttgctc
cgggagaggcaggacagagaggcagaggctgcagagcgtgccctgagagaatatgcacgg
aaagaagcaatgaaacagaaacagatagaggagaaaagagacaagaaaactggcttggaa
agaaccatcgacctgaaatcagacattcaaagtaagaaacaagaggagctgaagaatgta
agacatgaattgcagcagctggaggggttttcagacaggattctggagctggatcaggag
attgccaagacagagcacgagctggagaaggctgagaggagcagcaacattgaaacgctg
gaacaggaagtacgaaccctgcaaaacgagaagatgaacctggacaaagctcttaggaag
ctggatcaggagatggagcagttgaatctgcataccatgaccattacccagttggaaatg
ctaaagaaagacaaagcagataaagaagagcagatcaggaaagtgaaatcaagacattct
gaggagctgacatcactaatgggctacttccctaacaaaaaacaacttgaagactggctt
catgatcaaaatagaaaggttcatcaggcaagggataatcttgcagctctgaacaaacgg
ctggcgtcagtggaatgcgacaaaactcacaccagcactgagctgaaaaagaaggaggag
cagttggaccagcatgaaactcgcctctttgatgtctgtggaagccaggattttgacagt
gatctgaagagacttcaggatgacattgagaaaagctcaaagcagcgagctgtgcttgct
ggagccactgcagtttactcccagttcattacacaactgactgaggagaaccagtcctgt
tgtcctgtttgccaaagagtcttccagacagaggctgagctgcaggatgtcatcagcgat
ctgcagtctaagctgcgcctggctccggacaaactgaagtcaactgagtctgagcttaaa
aggaaagagaaaaaacgtgatgaaatgatgagtctcaaaccactcaggcaaactgtagat
gaactccaacacagggacataccaaacttgaggaacaagatccagaatgcaaacagggat
ttagcagccctgaaggctgagatagaagaacaggaagcagccttgcagacagctttgact
gaggaggagagtggcaaggcatgcttacaggatataacactaatggaaaggtaccagact
gatattagagatgttgaacggagaattgctcagcaggaggctaagctgctgggggttgat
ttgagtagaagtgttctccaagtaagccaagagaaacaagagagaaaacacttgtgggat
acagttactggtaaaattgagttgaagcaaaaactcaagcaagaccagcaaacccagatt
cagcagctgaagagtgaagttaatgacctcaaagcagagaagcttcagatttccagcagc
atgcagcggcggcggcagctggaggagcaatcagtggagttaaccactgaggttcagtcc
ttgtgcagagagatcaaggaagcaaaagagcagatctttcctttgaatgcagccctggat
gaattgcagcaggagaaggaggatctggtcaataaaaggactgcatgtaataaagaagca
caagagaagatcaatggcatcaaagagaaagttaaagacataaacaagcacgtgaaagaa
attgaaaactacattcaacagaggaaagctgactacaaaaagcaaaaggaggctgaactt
gaagaattaaactctcaattagctgcctgtgagaaacggaaggaaaagataagtaaagag
atggaaaccattcgccaggatattgacactaaaaagatacaggaaaggtggctgcaggat
aatctcactttgagagaacggaataaagagctgaaaggagtcgaggacaatataaagcac
ctggtgaaggagatgggagagatgaaagtcccacagctgaaaaatgaccaaaaacagtta
gaggagagaatagaatccctgaagaggaaccatcacctcgcccttggccgccagcgtggg
tttgaggaggagatcgttcgcttcagaaaggaactccgagagccacagttcagagatgca
gaggagacctacagggagatgatgattgtgatgagaacgacagagctggccaacaaagac
ctggacctgtactacaaggctctggataaggcaataatgacatttcacagcatgaagatg
gaagagatcaacaaaataatccgagacctctggcggagcacctacagaggacaagatatt
gagtatgtagagatccgttctgatgcagatgagaacgtctcagcctctgataaaagaagg
agctacaactacagagtagtgatggtgaagggggacacagccctggatatgagaggaagg
tgcagtgctgggcagaaggtgcttgcttctcttattattcgcctggctctggcagagacc
ttctgtctcaactgtggcatattggcactggatgaacctaccaccaacctggatcgagag
aacatcgagtcccttgcacatgccctggtggagatcatcaaaagccgctcgcagcagcgt
aacttccagctgctggtgatcacccacgacgaagactttgttgagcttctgggtcgttct
gagtatgtggaaaccttctacaggatcaagaagaaccttgaccagtgctctgagatcatg
aggtgcagtgtcagctccctgggctcctatgtgcattag
DBGET
integrated database retrieval system
