Pogoniulus pusillus (red-fronted tinkerbird): 135186084
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Entry
135186084 CDS
T10504
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135186084 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135186084 (CLP1)
Enzymes [BR:
ppus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
135186084 (CLP1)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
135186084 (CLP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
ATP_bind_1
TniB
AAA_22
AAA_16
CbiA
nSTAND3
MMR_HSR1
PduV-EutP
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
135186084
NCBI-ProteinID:
XP_064019548
LinkDB
All DBs
Position
24:complement(10110482..10113032)
Genome browser
AA seq
425 aa
AA seq
DB search
MADDGGEEKKQVAKFELERETELRFEVEASQTVQLELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCTVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKTTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDDR
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgatggcggcgaggagaagaagcaggtggccaagttcgagctggagcgggag
acggagctgcggttcgaggtggaggcctcgcagaccgtgcagctggaactgctcaccggc
atggccgaggtgttcggcacagagctcacccgcaacaagaagttcacttttgatgccggt
gccaaggtggccgtcttcacatggcatggctgcaccgtgcagctcagcggccgcaccgag
gtggcttatgtgtctaaggacacccccatgctgctctaccttaacacgcacacggcgctg
gaacagatgcggcggcaggcagagcgagaggacgagcgggggccccgcgtgatggtggtg
gggcccaccgacgtgggtaagacgactgtgtgccgcctactgttgaactatgctgtgcgc
ctgggccgccggcccaccttcgtggagctggacgtgggccagggctctgtctctatccct
ggtaccatgggtgcactctacattgagcggccagctgatgtggaggagggcttctccctc
caggccccccttgtctaccacttcggctccactacacctggcaccaacatcaagctctac
aacaagatcacatcccgcctggccgacgtcttcaaccagcgttgtgaggtgaaccggcgt
gcctcggtgagcggctgcgtcatcaacacctgcggctgggtgaagggctcaggctaccag
gcactggtgcacgctgcctctgcctttgaggtggacgtggtggtggtgctggaccaggag
cggctctataacgagctgaagagggacctgccccacttcgtgcgcactgtcctgctgccc
aagtccggcggggtggtggagcgctccaaagacttccgccgggagtgccgggatgaccgc
atccgggagtacttctacggcttccggggctgcttctacccgcacgcttttgacgtcaag
ttctctgatgtcaagatttacaaggtgggggcccccaccatcccagactcgtgcctgcca
ctgggcatgtcacaggaggacaaccagctgaagctggtgccagtgacaccagggcgagat
atggtgcaccacttgctcagcgtcagcactgccgacagccccgatgacaacatctcggag
accagtgtggctgggttcattgttgtcactggcgttgacctggagcgccaggtcttcacc
gtcctctcgcctgccccacgccccctgcccaagaacttcctcctcatcatggacattcgc
ttcatggatctcaagtag
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