Pogoniulus pusillus (red-fronted tinkerbird): 135186561
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Entry
135186561 CDS
T10504
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135186561 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppus03400
]
135186561 (MSH2)
DNA repair and recombination proteins [BR:
ppus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135186561 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
135186561
NCBI-ProteinID:
XP_064020436
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Position
25:9430169..9487795
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AA seq
939 aa
AA seq
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MAVEPPRDALWPEGAGAEAGFVRAVLALPEKPDTTVRFFERGDYYTVHGADARLAARELF
RTLAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSTADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETTGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQINSAALPEMEKQVAILSLSAIIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIE
ERLNLVEAFVEDPELRQCLQEDFLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNV
IQALEKYEGAHQMLLLAVFITPLNDISSDFAKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQSFLKNAAKELGLEAGKSIKLETNSQFGHHFRITCKEEKVLRNNS
KYEIVDTQKNGVKFTNSKLSSINDEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDVTF
ERGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAF
CMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIENAREKALELEEFQNIGKSKECEGEPAAKKFCREREKGEKIIQDFLCQVKALPLTD
MSEEDLKIKLKEMRNDVLAKNNSFVNAIIARKKVTSRKV
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggacgcgctgtggccggagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctcgccttgcccgagaagcccgacaccactgtgcgcttcttcgag
cgcggcgattactacacggtgcacggcgcggacgcgcgtttggccgcccgcgagctcttc
cgaaccctcgccgtcatccgccagctggcgggggcaccgggtactcagaagcttgagagt
gttgtgcttagtaagatgaacttcgaatcttttgtgagagatttgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagtaaatctgtcaaagaaaatgactgg
tatttagcatacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgcc
aacaatgacatgtcaacggccattggggttgtaggggttaagctgtcaactgctgatgga
caaagagtagtaggagtgggctatgtcgacactacactgagaaaattgagtgtctgtgag
tttccagataatgatcagttctcaaaccttgaagctctactggttcaactaggacctaag
gagtgtgtgctaccaggaggagagactactggagagatgggaaaactgcgacaagtcatt
cagaggggaggaatcctgattacggacaggaagaaggcagatttcacaacgaaagatatt
gttcaggatctcaatcgcttgttaaaatcaaaaaaagaagaacaaataaatagcgcagca
ttgccagagatggaaaagcaggttgctattttgtctttgtcagctattatcaagtttttg
gagttgctgtcagatgagtccaattttgggcaatttgaactgaccacttttgatcttagc
cagtatatggttctagataatgcagctgttcaggccctcaatctttttcagagttctgtg
gaaaatgctaatactgcacagtctctagctggtttgctgaataagtgcagaacccctcaa
ggacaaagacttgttaatcagtggatcaaacaaccacttatggacaagaatagaattgaa
gaaaggttgaatttggttgaagcttttgtggaggatccagaactccgtcagtgcctacag
gaagatttcttgcgtcgcttcccagaccttaaccggctggcaaagaagtttcaaagacaa
gcagcaaacttgcaggactgttaccgaatgtaccaggctattaatcaactgcctaatgtt
atacaagcactagaaaaatatgaaggagctcaccagatgttgttactggcagtgtttata
acacctcttaatgatatctcctccgactttgcaaagtttctggagatgatagaaacgact
ttggacatggaaaaggtggagaaccatgaatttcttgtcaaggcttcttttgatcctaat
ttgacagaattaagagagaagatgaatgagctggaagaaaaaatgcagtcctttttaaag
aatgcagccaaagaactaggtttggaagctggcaaaagtatcaaactggagacaaactca
cagtttggacatcattttcgaataacttgtaaggaggaaaaagttctccggaacaattca
aaatatgaaatagttgatacccagaagaatggggtgaaatttactaacagcaaactgagc
tccatcaatgatgaatatataaagaacagagaagaatacgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagagccaatccagaccatgaatgat
gtgatagctcaactggatgcaattgtcagttttgctcatgtgtcaaatggagcaccagtg
ccatacgtccgtcctgtcattctggaaaagggacaaggaaggattgtcctgaaaggtgcc
aggcatccttgcattgaagtacaagatgaggtggccttcatccccaatgatgttacattt
gagaggggcaagcagatgtttcacattattacaggccctaacatggggggcaaatcaact
tacatccgtcagacaggagtgattgttcttatggcccaaattgggtgttttgtaccctgc
gactctgcagaaataaccattgtggattgtatcctggctcgggtgggagctggagacagt
cagctgaaaggtgtgtctactttcatggctgaaatgttagaaactgcttccatccttagg
acggcatctgaaaactccctgataatcatcgacgagctgggaagaggaacttctacctat
gatggctttggcttagcgtgggctatttcagaatacattgctagcaaaatctgtgctttc
tgtatgtttgctacacacttccatgagctgacagctcttgctgaccaggtgccaacagta
aataacctccatgttactgctctgaccagcgatgacacactgacgatgctttaccgtgtc
aaggaaggtgtctgtgaccagagttttggaatacatgtggcagagttggcagctttccca
aaacatgtgatagaaaatgcaagagagaaggcactggagctggaggagtttcaaaacatt
ggcaagtccaaggaatgtgagggagaaccagcagccaagaaattctgcagagaaagagag
aaaggtgaaaagataattcaggattttctttgtcaagtgaaagcattgcccctgacagat
atgtcagaagaagacctcaaaatcaagctgaaagagatgagaaatgatgtactggcaaag
aacaacagttttgtgaatgcaatcattgcccgcaagaaagtgacatcacgaaaggtgtga
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