Pogoniulus pusillus (red-fronted tinkerbird): 135187027
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Entry
135187027 CDS
T10504
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
135187027 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppus04131
]
135187027 (VPS8)
Membrane trafficking [BR:
ppus04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
135187027 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
zf-RING_11
zf_RING_Vps8_fungal
TPR_Vps41
zf-RING_2
Beta-prop_WDR5
Beta-prop_WDR3_1st
zf-RING_UBOX
WDR55
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
135187027
NCBI-ProteinID:
XP_064021419
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All DBs
Position
26:176103..250338
Genome browser
AA seq
1399 aa
AA seq
DB search
MEAAAEAEPCPELPAHRALSVAELDRELDSRSELVRFVRGSLQLPPKIDDKEFDIPQVDT
PPTLESILNETDDEEESFVLEDPFLLSVDNTDTHSYDTSSVASSDSGDRAHLRRKKKLPD
SLSLHGSVTRLSLLKGISAQVVSAADKVDAGLPTAIAASNLIAVGTSHGLALVFDQNQAL
RLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTA
ILHIKFTDDPTLAICNDSGGSVFELAFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVE
LRDHPITQYSLLAMASLTKILVIGLRPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQSSVN
PMLAFCRGDVVHFLLVKRDDTGAIHVTKQKQLHLHYDLINFTWINSRTAVLLDSLEKLHI
IDRQTQEELETVEMAEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQIFY
LGTKSVHVLTLRSWRERVDHLLKQECLMDALALAWSFYEGKAKAVVGLSGDTSKRKAVIA
DRMVEILLHYADRALRKCPDQGKIQVMEQHFQEVVPAIVDYCLLLQRTDLLFNQIYDKMS
ENSVAKGIFLECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDI
QQVVLLCWENHLYDAMIYVYNSGMNDFISPMEKLFRVIAPPLNAGKSLTDEQVVMGNKLL
VYISCCLAGRAYPLGDIPEDLVPLVKNQIFEFLVRLHSAEGSAEEELYPYVRTLLHFDTR
EFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPN
NTLFVNRTLFDQVLEFLCSPEDDSRHSERQQVLLELLQAGGVVQFEESRLIQMAEKAEFY
QICEFMYERQLRYDRIIGCYLRDPLRKEEVFSYIHNILSMPGYSAEEKQLVWQKALEHIE
ELLLLSPCKAADLAAIHFSEQVESIIATLKDQFLLFQFLRSLLDPREGINQDLLHLAPCV
TEQFIELLCQYSPDQVLETLKVLECCRLEETIQITQKHQLHEASSYLLEKKGDVHGAFLV
MLEWLQSRLLMLTQAEAGSAELPLLENIEDTLMKTIDLCQRNSHSLDQQQREALWFPLLE
AMMSPQKLSGSSQCRYSEPLKSLTMQVLNSMAAFIALPAILQRILQDPVYGKGKLGEIQG
LVLGMLETFNYEQTLLETTTSLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQ
EAADEIIVFSCGHLYHSLCLLSKECGTVTKGLMRWMCYKCNSSNKAAKLSESFSELKKGS
GASLAQASCEALDPQQLQAFDQLCRLNRGASRLALLTELSRGHGSEMPFSMSHGDTATSS
VFQNENFQLHLAPPPLAED
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcagcggaggccgagccgtgcccggagctgcctgcgcaccgggcgctgagc
gtggcggagctggatcgcgagctggactcccgcagcgagctggtgcgtttcgtccgcggc
tctctccagcttccccccaagatcgatgacaaagaatttgacatccctcaagtggatacc
cctccaacactggagagcatcttaaacgagaccgatgatgaagaggagtcttttgttttg
gaggatccctttctcctgagcgtggataacacagacacacactcctatgacacatcttct
gtggccagctctgacagcggggaccgggcacacctgagaaggaagaagaagctgccagac
tctctctccctccatgggtcggtcacacggctgtcgcttctcaaagggatttctgcccag
gtcgtatctgcagcagacaaagtggatgctggcttgcccactgctattgcagcatcaaat
ctgatagcagtggggacttcccatgggctggcactagtatttgatcagaaccaggctctg
cggctgtgtctgggcagcactgctgttggggcgcagtatggggcaatctctgctctcagc
atcaacaatgactgctccaggctcctgtgtggctttgccaaaggacagatcacgatgtgg
gacctggccagtgggaagctgctacgctccataacagacgcccaccccccgggcacagcc
attctgcacatcaagttcacagatgacccaacgcttgccatctgcaacgacagcgggggc
tccgtctttgagctggcctttaagagggttatgggagtgagaacctgtgaatctcggtgt
ctcttcagtggctcaaagggggaagtttgctgcatcgaaccattacatgcaaaagttgag
ctgagagaccaccctatcacccagtactccctgctggccatggcctccctgaccaagatc
ctggtgattggcctgaggccgtctctgaaggtgtggatgacctttccctatggccgtatg
gacccttccagtgtcccccttctggcgtggcactttgtggctgtgcagagctctgtgaac
cccatgcttgccttctgccgaggagatgtggttcactttctcctggtcaagagagatgat
acaggtgcaatacatgtcactaagcagaagcagcttcatctgcactatgacctcatcaac
ttcacttggatcaactcgcgcacagctgtgctgctggacagcctggagaagctgcacatc
atcgaccgtcagacgcaggaggagctggagactgtggagatggcagaggtgcagctggtc
tacaacagcagccacttcaaatcacttgccacaggaggcaacgtcagcgaagccctggca
ctggttggagagaaagcttgttaccagtccatcagcagctgtgggggacagatattttac
cttgggactaagtctgttcatgtcttgacactgaggagctggagagagagagtcgaccac
cttctgaaacaagagtgtctcatggatgccctggcgctggcttggtcattctatgaaggc
aaagcaaaggctgtagtaggcttgtctggggacacaagcaagaggaaagcagtcattgca
gacaggatggttgagatccttctccattacgctgatcgggcgttgaggaagtgccctgac
caagggaaaatccaggtcatggagcagcattttcaggaggtggtgcctgccatcgtcgat
tactgtctcttgctccagcgcacggatctgttatttaaccagatctatgataagatgagt
gagaattctgtagctaaaggcatctttctggagtgcttggagccatatatcttaagtgac
aagctgatgggaatcacagctcaagtgatgaaagatttgctgcttcacttccaagacaag
aacaggttggaaaacttggaagcctgcattgtgcatatggatatcaccagcttagatatc
cagcaggtagttcttctgtgctgggaaaaccacctgtatgatgccatgatctatgtgtac
aacagtggcatgaacgacttcatcagccccatggagaagctgttcagagtcattgctcct
ccactgaatgctgggaagtctctcacagatgagcaggtggtgatgggcaacaagctgctc
gtgtatataagctgctgcctggcaggccgtgcctatcccttgggggatattcctgaagat
ctggtgcctttggttaaaaaccagatctttgagttcctggtccggctgcactcggctgag
ggctcagcggaggaggagctctacccctacgtgcggaccctgctgcacttcgacactcgc
gagttcctcaacgtccttgctctgacttttgaagacttcaagaatgacaagcaagctgtg
gagtatcagcagagaattgtggacatacttctgaaagtgatggtggagaattctgacttc
accccatcgcaggttggttgtctctttaccttccttgcccgccagcttgccaagcccaac
aacaccctgtttgtgaacaggacactgtttgaccaggtgctggagttcctgtgcagcccg
gaggatgactcgcgccactcggagaggcagcaggtcctcttggagttgctgcaggcagga
ggggtcgtgcagtttgaagagagccgtctgatccagatggcagagaaagctgaattctac
cagatctgtgagttcatgtacgagcggcagctccgctacgacagaatcatcggctgctac
ctgcgcgacccactgaggaaggaagaagttttcagctacattcacaacatcctgtccatg
cctggctacagcgctgaagaaaagcagttggtgtggcagaaagctctggaacacatagag
gagctgctgctgctgagcccctgtaaagcagctgatctggcagccattcacttcagtgag
caggttgagagcatcattgcaacccttaaggaccagttcttactcttccagtttctgagg
agtctccttgatccaagggaaggcattaaccaggacttgcttcacttagcaccctgcgtc
actgagcagttcatcgagctgctgtgtcagtacagcccagaccaggtcttggagacactt
aaagttctggaatgctgcagactggaagaaaccatccagataacccagaaacatcaactc
catgaggcttcttcatatctcctggagaagaagggagatgtccatggtgcctttctggtt
atgcttgagtggctgcagagcaggttgctgatgctgacccaggccgaggcaggctcagct
gaactccccttgctagaaaacatcgaagataccttaatgaaaacaattgacctttgccag
agaaactcacacagtttagaccaacagcagcgagaggccctctggtttcccctgctggag
gctatgatgtccccacagaaattatctggctcttcacagtgtcgatactctgaacccctg
aagagcctgacgatgcaggtgttgaacagtatggctgccttcattgctctgcctgcaatc
ctgcagaggatcctgcaggatccagtttatgggaaagggaaacttggagaaattcaagga
ctcgtcctgggaatgctggagacttttaactatgaacagacccttctagagacgactacc
agtcttttgaaccatgatctccactggtccctgtgtaacctaagagcttctgtcactaga
gggcttaccccgaagcaggattactgctgcatttgtctgcagcagtacaagagaaggcaa
gaagctgctgatgaaatcattgtgttcagctgtggccacttgtaccattcactgtgcctg
ctgagtaaggagtgtgggacagtaactaagggcctgatgaggtggatgtgctataaatgc
aactcgagcaacaaggcagcaaaactgagcgagagcttctcggagctgaaaaaaggaagt
ggagcatccttggcacaggcgagttgcgaggcgctggaccctcagcagctgcaggcgttt
gaccagctctgccggctcaaccgcggcgcctccagactggctctgctgacagaactgtct
cgtggccatggcagtgagatgcccttcagcatgtcccacggggacacagccaccagcagt
gtcttccagaatgagaacttccagctgcatctggccccccctcccctggctgaagactaa
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