Pogoniulus pusillus (red-fronted tinkerbird): 135187299
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Entry
135187299 CDS
T10504
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03030
DNA replication
ppus03420
Nucleotide excision repair
ppus03430
Mismatch repair
ppus03440
Homologous recombination
ppus03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135187299 (RPA1)
03420 Nucleotide excision repair
135187299 (RPA1)
03430 Mismatch repair
135187299 (RPA1)
03440 Homologous recombination
135187299 (RPA1)
03460 Fanconi anemia pathway
135187299 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppus03000
]
135187299 (RPA1)
03032 DNA replication proteins [BR:
ppus03032
]
135187299 (RPA1)
03400 DNA repair and recombination proteins [BR:
ppus03400
]
135187299 (RPA1)
Transcription factors [BR:
ppus03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
135187299 (RPA1)
DNA replication proteins [BR:
ppus03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
135187299 (RPA1)
DNA repair and recombination proteins [BR:
ppus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
135187299 (RPA1)
MMR (mismatch excision repair)
135187299 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
135187299 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
DUF4939
CATSPERD-E_C
A_deaminase
IBR
Motif
Other DBs
NCBI-GeneID:
135187299
NCBI-ProteinID:
XP_064021966
LinkDB
All DBs
Position
27:complement(8915249..8941837)
Genome browser
AA seq
614 aa
AA seq
DB search
MNMRLSEGAIAAIMQGENIIKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLSAQCICQVNRFIVNSLKDGRRVVILMDLDVLKTADQVGGNIGNPVPYNEG
QGQQRSSAPAANPAPSKPPQQNGSLSVAGPAAPKYHGPSNQFGKPSAPSSLKTPGESQTK
VVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQAD
KFFPLIELNKVYYFTKGHLKTANKQYTAVKNDYEITFTNDTSIVPCDDAQHLPSVQFEFV
SISELEETPKDSIVDVIGICKSYEDVTKITVKANNREVSKRNVHLMDTSGKQVTATLWGN
EAERFDGSRQPVVAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLE
CTSISDARGGTASGVNTNWKTLYDVKAENLGHGDKADYFSCVGTIVHLRKENCMYQACPS
QDCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLDYQWVTCFQDSAEFILGQN
AAFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAVDIKPVNYRDYC
KRLIASIRRNALPK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgcggctgagcgaaggggccatcgcggccataatgcagggagagaacatcatc
aagcccgtgctacaagtcatcaatacacgggctattgctacgggaaatgggccaccacgt
tacagagtgttgatgagtgacggcgttaacacactgtcgtcgttcatgctggcaacacag
ctgaactctctggtggaagaggagcgcttatcagctcagtgtatttgccaggttaacaga
ttcattgtcaacagcctgaaagatggcaggagggtggtcatcctcatggatttagatgtt
ctgaaaactgctgatcaggttggtgggaatattggcaatccagtgccatataatgaagga
caagggcagcaacgttcttcagctccagcagcaaacccagcgcccagcaaaccaccgcaa
caaaacggcagtttgtcagtggcaggtcctgctgctccaaagtaccacggaccctcaaac
cagtttggtaaacccagtgctcccagctcattgaagacaccaggggagtctcagaccaaa
gtagtgccgattgccagcttgaacccctaccagtctaagtggaccatttgtgctcgtgtt
acccaaaaagggcagatccgtacgtggagcaactcccgtggcgaaggaaaactcttctcc
atagagctggttgatgaaagtggtgagattagagctactgcattcaacgatcaagcagac
aagttctttccactcattgaattgaacaaggtttattattttaccaaaggccatttgaag
actgctaacaagcaatatacagctgttaagaatgactacgagattacattcactaatgac
acttcaattgtgccctgtgatgatgcccagcatcttccatctgttcagtttgaattcgta
tccatctctgagttggaggaaacacccaaagactcaattgttgatgtaattggaatttgt
aagagctatgaagatgtcactaaaatcacagtgaaagctaacaatagagaggtatcgaag
agaaacgttcatctgatggatacatcagggaaacaggtgacagctacgctgtggggaaat
gaggctgagcggtttgatggttccagacaacctgtggtagccatcaaaggagccagagtg
tctgatttcggtggcagaagcctgtctgtcctgtcctcgagtacagttgtcatcaaccct
gatagcccagaggcttttaagctccgaggatggtttgactctgagggacagcttctggag
tgtacctccatctcggatgcaaggggtgggacagcatctggagtcaataccaactggaaa
actttgtatgatgtcaaagctgagaacttgggacatggagataaggcagattattttagc
tgtgtgggcaccatcgtacatctgcgcaaagagaactgcatgtaccaggcatgtccctct
caggattgcaacaagaaagtgatagaccaacagaatggcctctatcggtgcgagaagtgc
gatcgcgagttccccaacttcaagtaccgcctgatgctcctggtgactattgcagactgt
ctagactatcaatgggtgacttgtttccaagactcagcagaattcattcttgggcagaat
gcagctttcctgggagaactgaaggaaaagaacgagcaggcctttgaagaagtgttccaa
aatgcaaactttaacacctatgagttcagaatcagagtaaaactggagacttacaatgat
gaatctcgtattaaggctacagcagtggacatcaaacctgtgaactacagagactactgc
aagaggttgattgcaagtatcaggagaaatgctttgccaaagtga
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