Pogoniulus pusillus (red-fronted tinkerbird): 135187741
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Entry
135187741 CDS
T10504
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
135187741 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppus03400
]
135187741 (LIG3)
Enzymes [BR:
ppus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135187741 (LIG3)
DNA repair and recombination proteins [BR:
ppus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
135187741 (LIG3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
FMP23
aRib
Motif
Other DBs
NCBI-GeneID:
135187741
NCBI-ProteinID:
XP_064022819
LinkDB
All DBs
Position
27:complement(2579971..2605460)
Genome browser
AA seq
988 aa
AA seq
DB search
MPSGIRTLSLAARALGRCAGLSCPPAQLCSPRPSPCLRGASPGPRPPLQPRPVSVRCSGG
AGALPGSPLWSAWPRRACTAAGEMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVP
NPFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDGEKELINKHISEA
NSKSGGTPKKKVIVQAKLTATGQLTTKDPVGLTNPSPKKFSGFTAKPKNSEDVSANSSHK
SSLSAKNCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSGGDGFHGDVYLT
IKLLLPGVIKMVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETVRLFFEQSKTCPP
AAKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQHISRRCTGNDLKCIIRLIKHDLKMNAGA
KHVLDALDPNAYEAFKASRNLQDVVERVLRNQQEAEKVPGVKKTLSVQASLMTPVQPMLA
EACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIP
QAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNEVSLM
DRPLSERRRFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDVKGNY
EPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSDKWCTV
TKCAGGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITG
AEFSRAEAHTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFSVTAGEED
AGESTAGSSGENEGNSRSSTPHSTIKTPPSKSPAKAQKPEESKAVIGSPPKAEEKRGEKR
KASELEDNGKTPLLDIFTGVKLYLAPSVQDFARLRRYFIAYDGDLVPEFDTASATHIIGD
TEENPGAQRVSPKWIWACIRKRRLVAPC
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcggcatcaggacgctgtctctggctgcccgagccctcggcaggtgcgcagga
ctctcctgccctcccgcacagctctgctcgccgagaccttccccgtgcctccgcggggcc
agccccggcccccggcccccgctgcagccgcggcccgtgtccgtgcggtgcagcggcggt
gctggggctttgcctggctctcctctttggagcgcttggccccgccgggcctgcacggcc
gcgggggagatggcggagcagaggtactgcgtagactacgccaagcgcggcacggcaggc
tgcaagaagtgcaaggagaagatcgtgaaggggatggttcgcattgggaagattgtgccc
aaccctttcacggagtctggcggggacatgaaggagtggtaccacgtgaagtgcattttt
gagaagctagacaaggctcgggccaccaccaagaaaatagaggacatcacagacctggaa
ggatgggaggagctccaggatggggagaaggaattgatcaacaagcacatctcagaagct
aattccaagagtggaggtacacctaagaagaaagtgatagtccaagctaagctgactgcc
acaggacagctgactacaaaggatccagtaggtctcaccaatccatcaccaaagaagttc
tctggcttcacagccaagccaaagaattcagaagatgtctctgcaaactcttcccacaag
tccagcctgtctgccaagaactgcgaccccaagcacaaggactgcctgctgcgggagttc
aggaagctctgtgccatggtggcagagaagcccagctacaatgtgaaaacacagatcatc
caggacttcctcaggaagggctctgggggagatggctttcatggggatgtctacctgacc
atcaagctgctgctaccaggggtcattaaaatggtttacaacctgaatgacaaacagatt
gtgaagctgttcagtaggatcttcaactgcagccaagaagaaatggtccgggacctggag
cagggagatgtttccgagaccgtgcgcctcttcttcgagcagagcaagacttgtccccca
gcagccaaaagcctcctgaccatccaagaggtggatgagttcctgatccagctgtcaaag
ctcactaaggaggatgaccagcaaagtgtgctgcagcacatctctcgcaggtgtacaggc
aacgacctgaagtgcatcatcaggctcattaagcacgacttgaaaatgaatgctggagca
aagcacgtgttggatgctttggatcccaacgcttacgaagccttcaaagcgtcacgcaac
ctgcaggacgtggtggagcgagtgctgaggaaccagcaggaggctgagaaggtgccaggg
gtgaagaagaccctcagtgttcaggcctctctgatgactccagttcagcccatgctggct
gaagcctgcaagtccatcgagtatgccatgaagaagtgtcccaacggcatgtacgcggag
atcaagtacgacggggagagggtgcaggtccacaagaatggagaccacttcagctacttc
agcaggagcctcaaacctgtcctcccacacaaagttgcccattttaaggacttcatcccc
caggctttccctggtggccaaagtatgattctggattcagaagtgcttctgattgacaac
aaaactggcaaaccccttccttttgggactcttggtgtgcacaagaaagctgctttccaa
gatgccaacgtttgcctctttgtgtttgactgcatctatttcaacgaggtcagcctgatg
gacaggcctctcagcgagcggcgcaggttcctccacgacaacatggtggagatccccaac
cgcatcctcttctcggagatgaagcacgtcacgaaagcttcagatctggcagatatgatc
accagagtcatccgagagggactggaaggactggtgctgaaagatgtcaagggtaattat
gagccagggaagagacactggctgaaggtgaagaaggactacctgaacgagggtgccatg
gctgacactgctgacctggtggtgctgggagctttctatgggcaaggcagcaaaggtggg
atgatgtccatcttcctcatgggctgctacgatcccaagagtgacaagtggtgcactgtg
accaagtgtgctggtggccacgatgatgccaccttggcacgactgcagacagagctggac
atggtgaagatcagcaaggatcccagtaaaatcccaaggtggctaaaaatcaacaaaatc
tactacccagacttcattgtcccagatccaaagaaagccccagtgtgggagatcacaggg
gctgagttctcccgggctgaagcccacactgccgatggcatctccatccgcttccctcgc
tgcacccgcatccgcgacgacaaggactggcagacagccaccaacctgcagcagctgaag
gagctgtaccagctctccaaggagaaggctgacttcagtgtcactgctggggaggaagat
gctggagagtccacagctggcagcagtggagagaacgagggaaattccaggtcttccaca
ccacacagcacgattaaaactcccccaagcaagtcacctgcaaaagcccagaagccagaa
gagagcaaagcagtgattggatcccctccaaaagcagaggagaaacgcggggagaagcgg
aaagcctcggagctggaggacaacgggaagacgccactgctggacatcttcaccggcgtg
aagctctacctggctccctcggtgcaggacttcgcccggctccggcgctacttcatcgcc
tacgacggggacctggtgccggagttcgacacggcctcggccacgcacatcatcggggac
actgaggagaaccctggggctcagagagtctcccccaagtggatctgggcctgcatcagg
aagcgcaggctggtggccccttgctag
DBGET
integrated database retrieval system
