Pogoniulus pusillus (red-fronted tinkerbird): 135188241
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Entry
135188241 CDS
T10504
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6 isoform X1
KO
K12855
pre-mRNA-processing factor 6
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135188241 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppus03041
]
135188241 (PRPF6)
Spliceosome [BR:
ppus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135188241 (PRPF6)
Complex C
U5 SnRNP specific factors
135188241 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
FAT
TPR_CcmH_CycH
T7SS_EccA1_N
ARM_TT21_C
TPR_21
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
135188241
NCBI-ProteinID:
XP_064023614
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All DBs
Position
29:complement(16171839..16203022)
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AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALTHYEDFPKLWMMKGQIEE
QKELVENAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPDLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCDVSKDIQNWQKKIGEILVLVAAKLKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctgggcatgcccgcgcccctgggctacgtgccgggg
ttgggccgcggagccacaggcttcaccacccgctctgatatcggccccgcgcgtgacgcc
aacgaccccgtggatgatcgccatgcgccgccggggaagaggacggttggggatcagatg
aagaagaaccagacagctgatgatgatgatgaagatctgaatgacaccaattacgatgag
ttcaatggttatgctgggagcctgttctcaagtggcccctatgaaaaagatgatgaggaa
gcagatgctatttatgcagctctggataagaggatggatgagcgcaggaaggagaggagg
gaacaacgagagaaagaggagatagagaaataccgcatggagagacccaaaattcagcag
cagttctcagacttgaaacggaagctggcagaggtgacagaggaagagtggctgagcatc
ccagaagtgggggatgccaggaacaaacgtcagaggaacccacgttatgagaagctgact
cctgtacctgacagcttctttgcaaagcatctgcagtcaggagagaaccacacctcagtg
gacccacgccagacgcaatttggtggcttgaatacaccatatccaggtggtctgaatact
ccatatccaggaggaatgaccccaggcttaatgacacctgggacaggtgaattggatatg
aggaagattggccaagccaggaacaccttgatggacatgaggctgagccaggtgtcggac
tctgtgagcggccaaactgtagtggaccccaaaggctatctgacagacttgaattccatg
attcccacacatggaggagatatcaatgacatcaagaaagctcgtctgctcctgaagtct
gtacgtgagaccaatcctcatcatccccctgcctggatagcatcagctcggctggaggag
gtcactggcaagctccaagtagctcgaaacctcatcatgaaaggcacagagatgtgcccc
aagagtgaagatgtgtggttagaagctgctaggctccagcctggggatacagccaaggct
gttgtggcccaggctgttcgccaccttccgcagtctgtccgcatctacatacgagcagca
gagctggagacagacatccgtgccaagaaacgtgtcctgaggaaagcccttgagcatgtt
ccaaactcagtgcgtttgtggaaggcagctgtggagctagaagaacctgaggatgccagg
atcatgctgagtcgagctgtggagtgctgccccaccagtgttgagctgtggcttgctctg
gcaaggctggagacgtatgagaacgctcggaaggtcctcaacaaagcccgggagaacatt
ccaaccgatcggcacatctggatcactgctgccaagctggaggaagccaacgggaacacc
cagatggtggagaaaatcattgacagagccatcacctccctgagggccaacggtgtggaa
atcaacagagagcagtggatacaggatgctgaggagtgtgataaagctggaagtgtggcc
acctgccaggcaatcatgcgagccgtgatcggcatcggcattgaggaggaagatcggaag
cacacctggatggaagatgcagacagttgtgttgcccacaacgccctggagtgtgcccga
gccatttatgcttatgccttgcaagtcttccccagcaagaagagtgtgtggctgagagca
gcatactttgaaaagaaccatggaaccagagaatccttggaggctcttttgcagagagct
gttgctcactgtcccaaagcggaagtcctctggctcatgggagccaaatccaagtggttg
gcaggagatgtgccagcagccagaagtattttggccttggctttccaggccaaccccaac
agtgaggagatctggctggctgccgtcaaactggagtcggagaacaatgagtacgagcga
gcgaggaggctgctggccaaggctcgcagcagtgcccccactgcaagggtcttcatgaag
tctgtgaagttagaatgggtgctggggaacattgctgcagcccaggagctttgtgaagaa
gccctgacacactacgaggacttccccaaactgtggatgatgaaaggacaaattgaggag
caaaaggagctggtagagaatgctcgagaggcttacaatcaagggctgaagaagtgtcct
cattccatccccctgtggcttttgctgtccaggctggaggagaaggttgggcagttgacc
agagcaagagccatcctggaaaaatcccgtctgaagaatcccaagaacccagacctatgg
ctggagtctgtgcgactggagtacagagctgggctgaagaacattgcaaataccctgatg
gccaaggccttgcaggaatgccccaactcaggaatcctgtggtcggaggcgatcttcctt
gaagcgcgaccgcaacgcaagaccaagagcgtggatgctctcaagaagtgtgaacatgac
ccacatgtcctgttggctgttgcaaagctcttctggagcgagcgtaaaataaccaaggcc
cgagagtggttccaccgaacagtgaagatagactctgacctgggggatgcctgggctttc
ttctacaagtttgagctccagcatggcacagaggagcaacaagaggaggtgaggaagcgc
tgtgagaacgccgaacctcgccatggggagctctggtgtgatgtctccaaggacatacag
aactggcagaagaagattggggagatccttgtgctggtggcagccaagcttaaaaacacc
ttctag
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