Pogoniulus pusillus (red-fronted tinkerbird): 135188541
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Entry
135188541 CDS
T10504
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03015
mRNA surveillance pathway
ppus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135188541 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
135188541 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135188541 (PABPC1L)
03041 Spliceosome [BR:
ppus03041
]
135188541 (PABPC1L)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135188541 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
135188541 (PABPC1L)
Spliceosome [BR:
ppus03041
]
Complex C
Other components
Complex C specific factors
135188541 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_RdRP1_2
Motif
Other DBs
NCBI-GeneID:
135188541
NCBI-ProteinID:
XP_064024098
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All DBs
Position
29:18823566..18834251
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AA seq
663 aa
AA seq
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MNASGTGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLRYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFDTHEAAARAIETMNGMLFNDRKVFVGHFKSRKERE
AEFGTRVMEFTNVYIKNFGDDMDDDRLRAIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEK
HEEAQKARSSCCLSPELAPCSSSHLSPEAVADMNGKEINGRVVYVGRAQKRLERQSELRR
KFEQIKQQRVSKYQGINLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFV
CFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILANQYIQRLATMRALPGPLLA
SFQPSPGYFLPSVPQPQTRATFYSPSPAVPVHPAARWSAQPPRPAPYPASTPILRAAVPP
RRLLSNISTVRQASTQVPRVPHQAQRVDIPIPIAVNIGTQTVSARVPPSPTLPRGAQQYK
YSSTVRNAQHMGQIPSVVASQVRESAVHVQGQEPLTASMLAAAPPREQKQMIGERLYPLI
HSMHPSLAGKITGMLLEIDNSELLLLLESPESLCSKIEEAVVVLQAQQVTEASHKGSAVT
FPQ
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctagtgggactggctatccattagcctctctatatgtgggagacctccaccca
gacgtgaccgaagccatgctctatgagaagttctctcccgctgggcccatcatgtccatc
agagtctgccgggatgttgccacacgccggtcgcttcgctatgcttacataaacttccag
cagcctgtggatgctgagcgagccctggacaccatgaacttcgaagtgatcaagggccgt
cccatccgcatcatgtggtcccagcgggaccctgggctccgcaagtcaggggttgggaac
atcttcatcaagaacctggatgactccattgataacaaagccctgtatgacactttctct
gcctttggaaacatcttgtcctgcaaggtggtttgtgacgagaacggatcccgtggctat
ggctttgttcactttgatactcacgaggcagcggctcgggccattgagaccatgaatgga
atgctgttcaatgacaggaaggtgtttgttggccatttcaaatcccgcaaagagcgtgag
gcagagtttgggactcgggtgatggagttcaccaacgtctacatcaaaaactttggggat
gacatggatgatgacaggctgcgggcaatcttctccaggtttggaaagactctaagtgtc
aaagttatgatggacaacactggccgctcaaagggctttgggtttgtcaactttgagaag
cacgaagaagcccagaaggcaagaagttcctgctgcctcagccctgagcttgcaccctgc
tcatcttctcacctctcccctgaggcagtggccgacatgaacgggaaggagatcaatggg
cgtgtggtgtacgtgggccgagcccagaagcggctggagcgccagagtgagctgagaagg
aagtttgagcagatcaagcagcagcgagtgagcaagtaccaggggatcaacctgtatgtg
aagaacctggatgatgggatagatgatgagaggctgaggaaggagttttctccctacggc
accatcactagtgccaaggtgatgacagaaggtggccacagcaaagggtttggctttgta
tgtttttcctctccagaagaggccaccaaggctgtgacagaaatgaacgggcggatcgtc
agcactaagcctctctatgttgcactagctcaaaggaaagaggaacggaaagcgatcctc
gccaaccagtacattcagagattagccaccatgagggccctgcctggccctctgctggcc
tccttccagccctccccggggtacttcctaccctcagtcccccagccgcaaaccagagcg
accttctacagccccagcccagccgtgccggtgcaccctgccgctcgctggagtgcgcag
cccccgcggcccgccccatatcctgcatctactcccatcctgagggctgctgtaccaccc
cggcgcctgctgtccaacatcagcaccgtgagacaggcctctacccaggtgccccgtgtg
ccccaccaggcccagagagtggacattcccatccctattgcagtcaacattgggacgcag
acagtcagtgcccgggtgcccccctcgcccaccctgccacggggagcccagcagtacaag
tactcctcaactgtcaggaatgctcagcatatgggacagataccatctgtggtggcctca
caggtgagagaatctgctgtgcatgtccaggggcaggagccactgacagcatctatgctt
gcagcagctcctcctcgggagcagaagcaaatgataggtgagcgcctctaccctctcatc
cactcgatgcatccctcactggctggcaagatcactgggatgctgctggagatagacaac
tcagagctgctgctgcttctggagtcccccgaatccctgtgctccaagatcgaggaggcg
gtggttgttctccaggcgcaacaggtcacagaggcatcacacaagggcagtgctgtgaca
ttcccgcagtga
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