Pogoniulus pusillus (red-fronted tinkerbird): 135190332
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Entry
135190332 CDS
T10504
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppus03021
]
135190332 (SETX)
Enzymes [BR:
ppus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135190332 (SETX)
5.6.2.5 RNA 5'-3' helicase
135190332 (SETX)
Transcription machinery [BR:
ppus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135190332 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
AAA_22
AAA_16
FapA
Motif
Other DBs
NCBI-GeneID:
135190332
NCBI-ProteinID:
XP_064027689
LinkDB
All DBs
Position
35:12844679..12885430
Genome browser
AA seq
2901 aa
AA seq
DB search
MSTCRWCTLSGSDTTEFLKEYASNQLSPEDLEGSNDDLCYCLECVVEYHKAREKLPRLHQ
VLWELETSRLLAHMEKSMQEEDEEDDELYLVEEKGDTLLSGFVGPDFENNLRVPLLEILK
YPYLLLHERVSELCVEVLCRMEQSHSSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFRVIELGLFESPDIYSSTMLEKGKLILLPSHLYDTTNYKNYWL
GICMLLTVLEEEAMDSLLLGPDKQNDFMQSILHTMEKEGDDDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNSEIENMRSSFKRTKSEPEPAHDDDITCSQIVYNY
NTEKPQKDTGWKSAICPNYCPSLYEDMQTLANLLQSELGRDMRVHESTFLWFIPFVQSLM
DLKDLGVAYIVEVIHYLCSEIKDTLNVRVQQCDKIAEFFLLILVSIVELHRNKKCLHLLW
ISSQEWVEAVVRCAKLPATAFARRTEKGPGPCPRGSPGSPQASSSVQHACVQLIRSLLKE
GYQIGQQALCKRYLNKLNLLLRGNLSLGWQLSVRETQELQVCLRQVVRSIKDRPVDPSAA
AGNGASSPDVPAVSVKQDMPLVHIKEEKNDDGCKMSVHGRDDFSSPAAVTSKEKGAGDCQ
ENPFLGRKSAWEEKCRDPSTSTMWWMSTKGLLGTIKKEADESPAQNSVLPKKSSLAAKLR
KKAQEKKADVPAAEKCHLDSQSLNPSAEHSDCRRGSELGKQREPLTPVHQAAAPPVGSHK
RGHSSGGKESNTAPSSSSDPKADTYKLKDLKVTIRRIELPPDLRSYSAASASKAEADQPK
LGRVPSSSENKRDLSSPASQSRPLALKCDSSDRLLEFSEYFKRQNSAVRRKEEGIVEVNP
EDNALTDSQVDRELCKLSLAAYAKGVNFPFDSSQESSVHDNMSDVTRKVKGAVRSSSDGQ
GPRPPCDDGNKTIVVLDSSDESVAGEEAKQVTEKVSLDKQPLTSSCISESKSPGSPLSLE
EFESQCFEFETDEDVYSVWSDTQAMAPTQEYKQDQLSTAASSSNSGDAQSDDNIDHTIEW
GYEVDYITDEMMEEEATIMEERLEDTSHHEEGDDVREATIRGKQLEDAFYQEDEDDDDMK
EATIVGRQLEDASHQEDDDMKATAIMEKQLEDPYQEDGDYDDDMKEATIMEKQLEDASHQ
EDGNDMKETTIRERHLEDAYQEDDDGNDMKETTIRERHLEDAYQEDDDDDDMKEAAIMGK
QLEDASHQEDDDDMKAATIMEKHLEDPYQEDDDGDMKESTIMEKQLEDASHQEGDDDDDM
KEAAIMEKHLEDPSQEEDGDDMKAATIMEKHLEDASHQEHDKRREATIMEKQLEDTSHQE
EDDDMKVATSSVLQESVSKGNVEDQLESLADKGPVAQDFTLDSAEPRASTSTISLASKLA
LKRKSTSPRKSMPKAKVARTIQRSPKSRLLEKTSVSQPDRSLPVVVPPRKVRQCPVPTST
VEKLGLKKAPRKAFELSQRSLESIVELRTHGKAAGRVGLPQKRKTKPIAAQSLSIKYNKK
FLACQDCQYLRQTRPPKRAREPLGGSERRSKVSKVDVKLRKPKPPSSELASGEGSVENQR
DKKRKKTFCLSEETRASELLTSLGSTRRSEDHNVMVSHVPTVSSLSSTVLVGTDKDEPSG
KGCVVQPECEKVTSTENGCEAAEDSGDDDDDLFLTQLDPVDMELCSQVESVEGITIASKT
PEEMATAESLHQSEPSAVVKCQHTACVEKVGKPGEYCRRHSASSSEGDHVFAKPLLPPSK
PRKPSTTKIFSSASSSRSAVFSKDLEDGKKLPPASKSKVSAAKQAMVRPPSIRPVPAATQ
APRPPSLSSIPQPYSYGKVLQSHNRQNEVAPGAARGAARGSHSTGLGAPQRDNNTFVNEV
LNWTYESIANFSQFGPPSNLLQSIVAPVPVHFQGYNDYFNTFFPLMMLNAFETLAQGWME
NQRGRGKSYYLLCKSELPDFRADVNTAHFEAHLREVDLARQLHPKEDDVVFLVVQNKKDT
FKEEGEMENSKVYHVGLVTRFYRASGSSARQKEQHTVYHVSVQTRGNLSFSKNKQVKCVV
VGSLVTTRREFRSLLLLSRSPLAKPIINPSYNDFCPRDLPVASESATSDMNDYNEGQKRA
IETAYAMVKQHPGLPKICLIHGPPGTGKSKTIVGLLSRVLRENTRSERTARKTNPKIKPN
RFLVCAPSNAAVDELMKKIIIAFKGKCQNRLEPLGNCGDIKLVRIGAEKAINSEVLGFSL
DKQVQHRMKRKTADLERDIQKKKESIDQRLDELIRQRAMNKCGKRESQIIDDEFNKVSKE
REHLASQLKEVRAHSQKVQAEIILESDIICCTLSASGGGLLESTLSRQGVDPFSCVIVDE
AGQSCEVETLIPLIHRCNKLVLVGDPRQLPPTVKSVKAQENGYDQSLMARLHRHLEEQMQ
SNMFRSLPVVQLTVQYRMHPDICLFPSNYVYGRTLKTDKATEENRCSSDWPFQPYLIFDV
GDGREERDNDSFSNPQEVKLVMELIKVIKARRKDLGLRRIGIITPYSAQKKRIQRQLDKV
FGNNSPGEVDTVDAFQGREKDCIIVTCVRANTTKGSIGFLASLQRLNVTITRARFSLFIL
GRLETLMENKDWNQLVQDAHKRGAIIKTSEEGYKRDALKILKLRPTGWCPTKAGTKTPAL
QPSFSSGKRVELAKPREASSSPLVASAAGHAAPQGSRVPQQAQGAQAVDFSRGSAPTPVE
AAAVPAAQEKPRDPRRAGMVGRTEAKGREQDSKGSSRAAQSTAGTTPQQGFEVSSASRDQ
SSRAEASKKPSRGHCDLPSRGHCDLPSKSPSLPRQEHDRRAGVHSKGGHDHSSRRSRDSH
ASSRTPENTEHSSAKRRKTSH
NT seq
8706 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccgatggtgtacacttagtggttctgacaccacagagttcctgaaggaa
tatgcttccaaccagctgtctccagaagatctggaaggctccaacgatgatctctgttac
tgcctggaatgtgtggttgaataccacaaagcaagggagaaattgccaaggctgcatcag
gttttgtgggaattggaaacctccagactccttgctcacatggagaaatccatgcaagaa
gaagatgaggaagatgatgagttgtatctagtggaagagaaaggagacactctgctgtct
ggctttgtgggcccggattttgagaacaacttgagggtgcctctgctagaaatcctgaaa
tatccttatctgctgctgcatgagagagtcagtgagctgtgtgtggaggtgctctgtagg
atggaacaaagtcacagctcctttcaggtctttgagaaatatccaggaatttatctcttt
ttggttcatccaaatgaagtgattcgtcgctgggccatcctaacagcaaggaatttaggg
aaggttgacagagatgattattatgacctccaggaagtgctgacttgcttgttcagagtc
attgagttggggctttttgagagtccagatatttatagctctacaatgcttgaaaagggt
aaactcatccttctgccatctcatttgtatgacaccaccaactacaagaactactggcta
gggatttgcatgttgctgacagtgctggaagaagaagctatggactccttgttgctgggc
ccagacaaacaaaatgatttcatgcagtccatacttcacaccatggagaaagaaggagat
gatgattctactgaccccttctggccagcgctgcattgtttcatggttattttggatcag
cttggatctaaagtctggggtcagcttattgatcctgtccaggcctttcaaaccattatc
aacagtgtgagctacaacagtgaaatagaaaacatgcgcagcagctttaagaggacaaaa
tctgagccagagccagcccacgatgatgacataacctgcagtcagattgtgtacaattat
aacacagaaaagcctcaaaaggacaccggatggaagtctgccatttgtcccaactactgc
cccagcctgtacgaagatatgcagacgctggctaacctgctgcagtctgagctcggcaga
gacatgcgtgtccacgagagcacattcctctggttcatcccttttgtgcagtccctgatg
gatctgaaggacttgggtgtggcttatatagtagaagtcatccactacctctgctccgag
atcaaagataccctcaacgtaagagtgcagcagtgcgacaagatcgccgaattctttctc
ctcatcttggtgtccattgttgagctgcacaggaataagaagtgcctgcacttgctgtgg
attagctcgcaggagtgggtggaagctgtggtgaggtgtgctaagcttcctgccacagcc
ttcgcccgccgcaccgagaagggccctggcccctgcccgagaggttccccaggatccccg
caagcttccagctcggtgcagcatgcctgcgtgcagctgatccgcagccttctgaaggag
ggctaccaaattgggcagcaggctctttgcaagcgctacctaaacaaactcaaccttctc
ctgcgaggaaatctgtccttgggttggcagctgagtgtccgggaaactcaggaattgcag
gtgtgcctaaggcaggtggtcaggagcataaaggacagaccagttgatccctctgctgct
gcaggaaatggtgcaagctccccagatgtgcctgctgtctccgtaaagcaagatatgcct
cttgtacatataaaggaagagaagaatgatgatggatgtaaaatgagtgtacatggcaga
gatgacttttcttcaccagctgctgtcacatcaaaggaaaagggagctggagattgccaa
gagaaccctttcctcggaagaaagagtgcttgggaagagaaatgtagggatccatctaca
agtacaatgtggtggatgtccacaaaaggcctcttggggactattaagaaggaggctgat
gaatctccagctcagaacagtgtcctcccaaagaagagctctttggcagcaaaattaaga
aagaaagctcaggaaaagaaggcagatgttcctgcagcagagaagtgccacctggacagt
cagagccttaacccaagtgcagagcattcagactgcaggagaggctcagagctgggaaag
cagcgtgaacccctaactccagtgcaccaggctgctgcacctcctgttggttcccataag
cgtgggcacagctcgggtggaaaggagagcaatacagctcccagttcctcttcagatcct
aaggcagacacttacaaactcaaggatctgaaagtcacaataaggaggattgagctgccg
cctgacttgaggagctactcagcagcaagtgcttcaaaagcagaggcagatcagcctaag
ctgggtcgtgttccatctagctctgaaaacaagagggacctgtccagccctgcttctcag
agcaggccactggccctgaagtgtgactccagtgacaggttgttggaattttcagagtat
ttcaagagacaaaacagtgcagtgaggaggaaagaggaagggatcgtggaggtgaatcct
gaagacaatgctttaacagactcccaggttgatagagagctctgcaaattatctttagct
gcctatgccaaaggtgtcaattttccctttgattccagccaagaaagctcagtccatgat
aacatgagtgatgtgacaaggaaagtgaaaggtgctgtaagatcttccagtgatggccaa
ggtcccaggcctccctgtgatgatggcaataaaaccattgtagtcttagactcttctgat
gaaagtgtggctggtgaggaggcaaaacaagtcactgaaaaagtgtcccttgacaagcag
cctttgacttccagctgcatttctgagtcgaagtctccaggctctcccttgtccctggaa
gagtttgagtctcagtgctttgagtttgaaacagatgaggatgtctactcggtttggtca
gacactcaagccatggcaccaactcaggagtataaacaagatcagctttcaacagcagct
agcagcagtaattcaggtgatgcacagagtgatgacaacattgaccacaccattgagtgg
ggttatgaagtggattacataactgatgagatgatggaagaagaagcaaccatcatggag
gagcggctagaagatacttctcatcatgaagaaggtgatgatgtaagagaggcaaccatc
agggggaagcagctagaagatgctttttatcaggaagatgaagatgatgatgatatgaaa
gaagcaaccatcgtggggaggcagctagaagatgcttctcatcaggaagatgatgatatg
aaagcgacagccatcatggagaagcagctagaagatccttatcaggaagatggtgattat
gatgatgatatgaaagaggcaaccatcatggagaagcagctagaagatgcttctcatcag
gaagatggtaatgatatgaaagagacaaccatcagggagaggcatctagaagatgcttat
caggaagatgatgatggtaatgatatgaaagagacaaccatcagggagaggcatctagaa
gatgcttatcaggaagatgatgatgatgatgatatgaaagaggcagccatcatggggaag
cagctagaagatgcttctcatcaggaagatgatgatgatatgaaagcagcaaccatcatg
gagaagcatctagaagatccttatcaggaagatgatgatggtgatatgaaagagtcaacc
atcatggagaagcagctggaagatgcttctcatcaggaaggtgatgatgatgatgatatg
aaagaggcagccatcatggagaagcatctagaagatccttctcaggaagaagatggtgat
gatatgaaagcagcaaccatcatggagaagcatctagaagatgcttctcatcaggagcat
gataagaggagagaggcaaccatcatggagaagcaactagaagatacttctcaccaggaa
gaagatgatgatatgaaagtagcaacttcctcagtgttgcaagaatctgttagtaaggga
aatgtggaagatcaactggagagtcttgcagacaaaggtcctgttgctcaagacttcacc
ttggactctgctgaacccagagcatctacatctaccatctccttagcttccaaactggcc
cttaagagaaagagcacaagcccccggaagagcatgcccaaagccaaggtagcaagaacc
atccagaggagtcctaaaagtagactccttgagaagacctcagtttctcaacctgacagg
tcactgcctgtggtagttcctccaaggaaggtcaggcagtgtcctgtgccaacatcaact
gtagagaagcttggtctgaagaaggccccacgcaaagccttcgagttgtcccagcgctct
ttggagagcatagtggagctacgcacccatgggaaagctgcagggagggttggactccca
cagaaacggaagacaaagccaattgctgctcagagtttgtccataaagtacaacaagaag
tttctggcctgccaggactgtcaatatttaaggcagacgaggcccccaaaacgtgccaga
gaacctctgggaggttctgagcgtagaagcaaagttagcaaagtggatgtaaagctaagg
aaaccaaagcctccgagttctgagctggcatctggtgaggggtctgttgaaaaccaaaga
gacaagaaaaggaagaagactttttgtctctctgaggagacacgtgcctctgaactgctc
acttctttgggctcaaccagaagatcagaggatcacaacgtgatggtttctcatgtacct
acagtttcaagtctctcttccactgtgcttgttggaactgataaagatgaaccttcaggc
aaaggctgcgttgtccagcctgagtgtgagaaggtgacttcaacagaaaacgggtgtgaa
gcagctgaggacagtggagatgatgatgatgatttatttttaactcagttagatcctgta
gatatggaattatgttcccaagtggaaagtgttgaaggtattactatagctagtaaaacc
cctgaggagatggccactgctgagagccttcaccaaagtgagccctcagctgtggtgaaa
tgccagcacacagcctgcgtggagaaggtgggaaagccaggagagtactgcaggaggcat
tcagccagcagctcggaaggagatcatgtgtttgccaagcctctcctgccaccttccaaa
cccagaaagccttccaccaccaaaatcttcagctcagcaagctcttcacgcagtgcagtc
ttcagcaaggacctagaggatggcaaaaagctgccgccggcttccaaaagcaaagtgagc
gcagccaaacaggcgatggtcaggccacccagcatcaggcctgtgccagctgccactcag
gctcccaggcccccaagtttgagtagcattcctcagccctacagttatgggaaagttctg
cagtcccacaacaggcagaacgaggtcgctcctggagctgccagaggagctgcccgaggc
agccactccactggccttggcgctccgcagcgagacaacaacacttttgtcaatgaagtt
ctgaactggacttatgaatccattgcaaacttcagccagtttggacctccaagtaacctc
ctgcagtccattgtagcccctgttcctgtccacttccagggatacaatgactattttaat
accttcttccccttgatgatgctaaatgcctttgaaacactggcacaaggctggatggaa
aaccagagaggaagagggaagagttactacctactctgcaagagtgagttgccagacttc
cgtgctgatgtgaatacagcacactttgaagctcatcttcgagaagtggatttggcaagg
cagcttcatccaaaggaggatgatgtagtctttttggtggtccagaacaaaaaagacacc
ttcaaggaagaaggggagatggaaaactctaaagtgtatcacgttgggcttgtgactcgc
ttttatcgtgcctctggctcttcagccagacagaaggagcagcacactgtctatcatgtt
tctgtgcaaactcgaggcaatttgtccttctccaaaaacaagcaggtgaagtgtgtggtg
gttggctccctggtgaccacacgccgggagttcagaagtctgctgctgctgagcaggagt
cccctggctaaacccatcataaatccatcttacaatgacttctgccccagggatttgcct
gtagcttcagagagtgctacatctgatatgaatgactacaatgaaggtcagaagagagcc
attgagacagcttatgccatggtcaagcagcatccagggcttcccaagatctgcctcatc
catggcccacctgggactgggaaatcaaaaactattgttggccttctgtctcgtgtcctg
agagaaaacaccaggagtgagagaacagcaaggaaaacaaatcccaagatcaagccgaat
cggttcctggtgtgtgcaccctccaatgctgctgtggatgagctgatgaaaaagatcatc
attgctttcaaggggaagtgccagaacaggctggagcctctgggaaattgtggagacatc
aaattggtgcgaattggtgctgagaaagcaatcaacagtgaagtcctgggatttagcctg
gataagcaagttcaacatagaatgaaaaggaagacagcagacctggagagggacattcag
aagaagaaggaatccatagaccaaaggctggatgagctgatccgccagcgtgccatgaac
aagtgtggcaagagggagagtcaaataatagatgatgaatttaacaaagtttcaaaggag
agagaacatcttgcatctcagctaaaggaggttcgggcacactctcagaaagtgcaggca
gaaatcatcctggagtccgacatcatctgctgcacgctgagcgccagcggaggagggctg
ctggaatctactttatccaggcaaggagttgatcctttcagctgtgtcattgtggatgag
gcagggcagtcctgcgaggtcgaaacactcatcccactgatccatcgctgcaataaactt
gtccttgttggagatcccagacagcttcctcccactgtgaaatcagtaaaagctcaggag
aatggctatgaccagtccttgatggcaaggctgcacaggcacctggaggagcaaatgcag
agcaacatgttccgcagcctgccggtcgtgcagctgactgtgcagtacaggatgcaccct
gacatctgcctcttcccatccaactatgtctatggcaggactctaaagactgacaaagcc
acagaagagaacagatgttcttcagactggccattccagccctacctcatttttgatgtt
ggagatggtcgtgaggagcgagacaatgactctttcagcaatcctcaggaagtaaagctg
gtgatggaactgattaaagtcatcaaagcaagaaggaaggatctgggcctccgtcgcatt
gggatcattaccccttacagtgcccagaagaagagaatccaaaggcagctggacaaagtg
tttgggaataacagcccaggagaagtggatacagtggatgccttccagggacgagagaag
gactgcatcatagtgacctgtgtccgggcaaacaccaccaaaggctccattgggtttctg
gcaagccttcagcgcctgaatgtcacaatcacccgagccaggttcagcctcttcatcctc
ggaagactggaaacactcatggaaaacaaagactggaaccagctggttcaggatgctcac
aaaagaggagccattatcaagacatcagaagaaggctacaagagagatgctcttaagatc
ttgaagctcaggccaacaggatggtgtccaaccaaggcagggacaaagactcctgctctg
cagccttccttctccagtggcaagagggttgagcttgcaaagccaagggaggccagcagc
agcccattggtggcatctgctgctggccacgcagcgccacaaggaagccgagtgccccag
caggcacagggagctcaggctgtggacttcagcagaggcagtgcccccacacctgtggag
gctgcagcagttcctgctgcccaggagaagccaagagacccaaggagggcaggcatggtt
ggcaggactgaagctaaggggagggagcaggactcaaaaggcagcagtcgagcagcccag
agcactgcagggacaacgccgcagcaaggctttgaagtgtcctcggccagcagggaccag
agttccagagcagaagcttctaagaagccctccaggggacattgtgacctgccctccagg
ggacattgtgacctgccctccaaatcaccttccttacctcgacaggagcatgaccggaga
gctggggtccacagtaaaggaggtcacgatcacagcagcaggaggagcagggacagtcat
gcttcaagtagaaccccagagaacacagaacacagcagtgccaagaggaggaagacctct
cactga
DBGET
integrated database retrieval system
