Pogoniulus pusillus (red-fronted tinkerbird): 135191737
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Entry
135191737 CDS
T10504
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03013
Nucleocytoplasmic transport
ppus03015
mRNA surveillance pathway
ppus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135191737 (CASC3)
09122 Translation
03013 Nucleocytoplasmic transport
135191737 (CASC3)
03015 mRNA surveillance pathway
135191737 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135191737 (CASC3)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135191737 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
135191737
NCBI-ProteinID:
XP_064030364
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All DBs
Position
40:2891656..2907376
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AA seq
721 aa
AA seq
DB search
MADRRRQRASQDSEDDSDSAASDSADSAASAARSRSASGSASGSGSPRPSHRASRGAAGA
LSAGPRGRGAESAAGGAAKSAPESECESEDGIEGDAVLSDYESAEDSEAEEEDYSEEESA
KVELKQDSNDSCESAARAEKGDEKPEPKGAVTGERQSGDGQESTEPVENKVGKKVPKHLD
DDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPK
TRQELIALYGYDIRSAHSPEDIKPRRMRKPRFGSPPQRDPNWSNERPNKPPRHQGADSTS
AAPRTFTSRSSAGTGRMPPPRNYPRVGGYKESRPSYRASEAGQQLSRGSEQAKQDSNYRA
KRPEHSPPRDKSPELEAAHGHGSPSREELALDSQATAVDAAQPPPDRPVEKKSYSRARRT
RVKAGEAGKLADEVPTSEGLAPVPPKPVQAETSTPPPKSSNWESAVEANLDGLEQEMTQM
NLAEQNWSPGQSQFLQPRELRGISNHMHVGTGPPPQFNRMEEMAVQGGRAKRYSSQRQRP
PVPEPAPPMHISIMEGHYYDPLQFQGPIYTHSENPAPLPPQGMIVQPEMHLPHPGLHPHQ
TPAPMANPGLYPPPVSMPPGQPPPQQLLAPTYFSPPGVMNFGNPGYPYPPGALPPPPPPH
LYSNTQAQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPEQDSKGEKSKERTN
T
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgagcctcgcaggacagcgaggacgactcggactcggcc
gcctcggatagcgccgattcggccgccagcgctgctcgctcccgctccgcatccggctcc
gcgtcgggatccggttcgcctcgcccgtcgcaccgcgcttcccggggagctgccggggct
ctgagcgctgggccgcggggccgcggagcggagagcgctgccgggggtgcggccaagagc
gcgcccgagtcggagtgtgaaagtgaggatggcatcgaaggagatgccgttctctcggat
tacgaaagcgccgaagactcggaggcagaggaagaggattatagcgaggaggaaagtgcc
aaagtggagctgaagcaggacagcaacgattcctgcgagtcagcagccagagcagagaag
ggagatgagaaacctgagcccaagggggctgtgaccggcgagaggcagagcggggatggg
caggagagcaccgagcccgtggagaataaggttgggaagaaagttcccaagcatctggac
gatgatgaggaccggaagaacccagcctacatcccacgcaagggcctcttcttcgagcac
gacctccgggggcagacgcaggaggaggaggtcaggccaaagggtcgtcagaggaagctg
tggaaggatgagggccgctgggagcatgacaagttccgggaggatgagcaggcccccaag
accaggcaggagctgattgcgctctacggctacgacatcagatccgcccacagccccgag
gacatcaagcccaggaggatgcgcaagcccaggtttgggagccctcctcagcgagacccc
aactggtccaacgagagaccaaataaacccccgaggcaccaaggagcagacagcacttca
gctgccccccgaaccttcaccagcaggagctctgctggcacagggaggatgccccctcct
aggaactacccccgggtggggggctacaaggagagccgccccagctaccgagcctcagag
gcagggcagcagctgtcccggggcagtgagcaggccaagcaggacagcaactacagagcc
aaacgccctgagcacagtccccctagggacaagtccccggagctggaggcagcacacggc
cacggcagccctagcagggaggagcttgctttggacagccaggccactgctgttgatgct
gcacagccaccaccagacaggccagtggagaagaagtcttactcccgggcaagaaggacc
agagtcaaagctggggaggcagggaagctggcagatgaggtgcccacctcggaggggctg
gctcctgtgcctccaaagcctgtccaagctgagacatccaccccaccacccaagagcagt
aactgggagtctgcagtagaagccaacttggatggactggagcaggagatgactcagatg
aacctcgctgagcagaactggagcccagggcagtcccagttcctccagccccgggagctg
cggggtatttctaaccatatgcacgtgggaactgggccaccacctcagttcaacaggatg
gaggaaatggcggtgcagggaggccgtgccaagcgctactcgtcgcagcgccagagaccc
ccggtgccagagcctgcgccccccatgcacatcagcatcatggaagggcactactatgac
ccactacaattccagggaccaatctacacccacagtgagaacccagccccgctgccaccc
caagggatgattgtccagccagaaatgcacctccctcatccaggtttacatccccaccag
acgccagcccccatggcaaaccctgggctgtaccctccgccagtctccatgccccccggg
cagcccccgccgcagcagctgctcgctccaacttacttctcccctcctggagtgatgaat
tttgggaatcctggctacccctaccccccaggagctctgcctcctccaccccctcctcat
ctctattccaacacgcaggcccagtcccaggtctatggaggggtcacctactacaacact
gtccagcagcaagtgcagcccaagccgtcgccgcctcgccgcacctcccaacctgtcact
atcaagccaccacctcctgagcaggacagcaaaggtgaaaagtcaaaggagaggaccaac
acgtag
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